Analysis of interatomic Contacts of Structural Units in PDB entry:
5WC8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WC8 entry

There are 2 chains in PDB entry 5WC8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
M
 PHE 21ILE 401
A
 PHE 21ILE 401
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 5WC8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
M
43 56Right-handed alpha
Helix 2
AA2
M
72 81Right-handed alpha
Helix 3
AA3
M
82 86Right-handed 310
Helix 4
AA4
M
102 121Right-handed alpha
Helix 5
AA5
M
132 144Right-handed alpha
Helix 6
AA6
M
154 159Right-handed 310
Helix 7
AA7
M
162 173Right-handed alpha
Helix 8
AA8
M
175 188Right-handed alpha
Helix 9
AA9
M
194 199Right-handed 310
Helix 10
AB1
M
211 216Right-handed 310
Helix 11
AB2
M
228 232Right-handed 310
Helix 12
AB3
M
236 246Right-handed alpha
Helix 13
AB4
M
263 282Right-handed alpha
Helix 14
AB5
M
295 306Right-handed alpha
Helix 15
AB6
M
321 330Right-handed alpha
Helix 16
AB7
M
340 349Right-handed alpha
Helix 17
AB8
M
357 366Right-handed alpha
Helix 18
AB9
M
372 387Right-handed alpha
Helix 19
AC1
M
397 401Right-handed 310
Helix 20
AC2
A
43 56Right-handed alpha
Helix 21
AC3
A
67 71Right-handed 310
Helix 22
AC4
A
72 81Right-handed alpha
Helix 23
AC5
A
82 86Right-handed 310
Helix 24
AC6
A
102 121Right-handed alpha
Helix 25
AC7
A
132 144Right-handed alpha
Helix 26
AC8
A
154 159Right-handed 310
Helix 27
AC9
A
162 173Right-handed alpha
Helix 28
AD1
A
175 188Right-handed alpha
Helix 29
AD2
A
194 199Right-handed 310
Helix 30
AD3
A
211 216Right-handed 310
Helix 31
AD4
A
236 246Right-handed alpha
Helix 32
AD5
A
263 282Right-handed alpha
Helix 33
AD6
A
295 306Right-handed alpha
Helix 34
AD7
A
321 330Right-handed alpha
Helix 35
AD8
A
340 349Right-handed alpha
Helix 36
AD9
A
357 366Right-handed alpha
Helix 37
AE1
A
372 387Right-handed alpha
Helix 38
AE2
A
397 401Right-handed 310
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There are 4 sheets in PDB entry 5WC8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
88 93first strand
Strand 2
M
60 66parallel
Strand 3
M
35 39parallel
Strand 4
M
124 127parallel
Strand 5
M
147 151parallel
Strand 6
M
206 209parallel
Strand 7
M
224 226parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
312 314first strand
Strand 2
M
286 289parallel
Strand 3
M
253 256parallel
Strand 4
M
333 336parallel
Strand 5
M
353 356parallel
Strand 6
M
392 394parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 93first strand
Strand 2
A
60 66parallel
Strand 3
A
35 39parallel
Strand 4
A
124 127parallel
Strand 5
A
147 151parallel
Strand 6
A
206 209parallel
Strand 7
A
224 226parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
312 314first strand
Strand 2
A
286 289parallel
Strand 3
A
253 256parallel
Strand 4
A
333 336parallel
Strand 5
A
353 356parallel
Strand 6
A
392 394parallel
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