Analysis of interatomic Contacts of Structural Units in PDB entry:
5WCB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5WCB entry

There are 6 chains in PDB entry 5WCB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 173	MET 472
B	TYR 173	MET 472
C	TYR 173	MET 472
D	TYR 173	MET 472
E	TYR 173	MET 472
F	TYR 173	MET 472

There are 85 helices in PDB entry 5WCB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	174	179	Right-handed alpha
Helix 2	AA2	A	198	207	Right-handed alpha
Helix 3	AA3	A	209	215	Right-handed alpha
Helix 4	AA4	A	238	250	Right-handed alpha
Helix 5	AA5	A	270	284	Right-handed alpha
Helix 6	AA6	A	308	321	Right-handed alpha
Helix 7	AA7	A	341	345	Right-handed 310
Helix 8	AA8	A	348	353	Right-handed alpha
Helix 9	AA9	A	364	375	Right-handed alpha
Helix 10	AB1	A	385	390	Right-handed alpha
Helix 11	AB2	A	397	415	Right-handed alpha
Helix 12	AB3	A	427	436	Right-handed alpha
Helix 13	AB4	A	440	442	Right-handed 310
Helix 14	AB5	A	443	449	Right-handed alpha
Helix 15	AB6	A	455	468	Right-handed alpha
Helix 16	AB7	B	175	181	Right-handed alpha
Helix 17	AB8	B	198	208	Right-handed alpha
Helix 18	AB9	B	210	214	Right-handed 310
Helix 19	AC1	B	220	224	Right-handed 310
Helix 20	AC2	B	241	250	Right-handed alpha
Helix 21	AC3	B	271	285	Right-handed alpha
Helix 22	AC4	B	308	321	Right-handed alpha
Helix 23	AC5	B	341	345	Right-handed 310
Helix 24	AC6	B	347	353	Right-handed alpha
Helix 25	AC7	B	363	375	Right-handed alpha
Helix 26	AC8	B	385	390	Right-handed alpha
Helix 27	AC9	B	391	393	Right-handed 310
Helix 28	AD1	B	397	416	Right-handed alpha
Helix 29	AD2	B	427	436	Right-handed alpha
Helix 30	AD3	B	439	450	Right-handed alpha
Helix 31	AD4	B	455	466	Right-handed alpha
Helix 32	AD5	C	174	179	Right-handed alpha
Helix 33	AD6	C	198	215	Right-handed alpha
Helix 34	AD7	C	238	250	Right-handed alpha
Helix 35	AD8	C	270	285	Right-handed alpha
Helix 36	AD9	C	308	322	Right-handed alpha
Helix 37	AE1	C	348	353	Right-handed alpha
Helix 38	AE2	C	363	375	Right-handed alpha
Helix 39	AE3	C	385	393	Right-handed alpha
Helix 40	AE4	C	397	416	Right-handed alpha
Helix 41	AE5	C	427	433	Right-handed alpha
Helix 42	AE6	C	439	449	Right-handed alpha
Helix 43	AE7	C	456	466	Right-handed alpha
Helix 44	AE8	D	174	182	Right-handed alpha
Helix 45	AE9	D	191	195	Right-handed 310
Helix 46	AF1	D	198	215	Right-handed alpha
Helix 47	AF2	D	220	224	Right-handed 310
Helix 48	AF3	D	238	250	Right-handed alpha
Helix 49	AF4	D	272	284	Right-handed alpha
Helix 50	AF5	D	308	322	Right-handed alpha
Helix 51	AF6	D	341	345	Right-handed 310
Helix 52	AF7	D	348	353	Right-handed alpha
Helix 53	AF8	D	363	375	Right-handed alpha
Helix 54	AF9	D	385	393	Right-handed alpha
Helix 55	AG1	D	397	416	Right-handed alpha
Helix 56	AG2	D	427	432	Right-handed alpha
Helix 57	AG3	D	439	450	Right-handed alpha
Helix 58	AG4	D	455	468	Right-handed alpha
Helix 59	AG5	E	174	179	Right-handed alpha
Helix 60	AG6	E	180	182	Right-handed 310
Helix 61	AG7	E	198	215	Right-handed alpha
Helix 62	AG8	E	238	250	Right-handed alpha
Helix 63	AG9	E	270	284	Right-handed alpha
Helix 64	AH1	E	308	320	Right-handed alpha
Helix 65	AH2	E	341	345	Right-handed 310
Helix 66	AH3	E	348	353	Right-handed alpha
Helix 67	AH4	E	365	375	Right-handed alpha
Helix 68	AH5	E	385	392	Right-handed alpha
Helix 69	AH6	E	397	416	Right-handed alpha
Helix 70	AH7	E	426	432	Right-handed alpha
Helix 71	AH8	E	439	449	Right-handed alpha
Helix 72	AH9	E	456	468	Right-handed alpha
Helix 73	AI1	F	175	181	Right-handed alpha
Helix 74	AI2	F	198	215	Right-handed alpha
Helix 75	AI3	F	240	250	Right-handed alpha
Helix 76	AI4	F	271	284	Right-handed alpha
Helix 77	AI5	F	308	321	Right-handed alpha
Helix 78	AI6	F	341	345	Right-handed 310
Helix 79	AI7	F	348	353	Right-handed alpha
Helix 80	AI8	F	363	375	Right-handed alpha
Helix 81	AI9	F	385	390	Right-handed alpha
Helix 82	AJ1	F	397	416	Right-handed alpha
Helix 83	AJ2	F	427	436	Right-handed alpha
Helix 84	AJ3	F	439	450	Right-handed alpha
Helix 85	AJ4	F	455	468	Right-handed alpha

There are 11 sheets in PDB entry 5WCB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	231	first strand
Strand 2	A	356	357	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	291	first strand
Strand 2	A	336	337	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	230	231	first strand
Strand 2	B	356	357	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	253	254	first strand
Strand 2	B	287	288	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	253	254	first strand
Strand 2	C	287	288	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	253	254	first strand
Strand 2	D	287	288	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	290	292	first strand
Strand 2	D	336	338	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	253	254	first strand
Strand 2	E	287	288	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	230	232	first strand
Strand 2	F	356	358	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	253	254	first strand
Strand 2	F	287	288	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	290	292	first strand
Strand 2	F	336	338	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5WCB

Analysis of interatomic Contacts of Structural Units in PDB entry:
5WCB