Analysis of interatomic Contacts of Structural Units in PDB entry:
5WCE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WCE entry

There are 2 chains in PDB entry 5WCE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 372
B
 MET 1VAL 372
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5WCE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 19Right-handed alpha
Helix 2
AA2
A
27 30Right-handed 310
Helix 3
AA3
A
71 81Right-handed alpha
Helix 4
AA4
A
113 117Right-handed 310
Helix 5
AA5
A
133 142Right-handed alpha
Helix 6
AA6
A
143 147Right-handed 310
Helix 7
AA7
A
203 214Right-handed alpha
Helix 8
AA8
A
249 253Right-handed 310
Helix 9
AA9
A
266 278Right-handed alpha
Helix 10
AB1
A
327 337Right-handed alpha
Helix 11
AB2
B
7 19Right-handed alpha
Helix 12
AB3
B
27 30Right-handed 310
Helix 13
AB4
B
71 81Right-handed alpha
Helix 14
AB5
B
113 117Right-handed 310
Helix 15
AB6
B
133 142Right-handed alpha
Helix 16
AB7
B
143 147Right-handed 310
Helix 17
AB8
B
154 156Right-handed 310
Helix 18
AB9
B
203 215Right-handed alpha
Helix 19
AC1
B
249 253Right-handed 310
Helix 20
AC2
B
266 278Right-handed alpha
Helix 21
AC3
B
327 337Right-handed alpha
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There are 6 sheets in PDB entry 5WCE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 63first strand
Strand 2
A
2 6anti-parallel
Strand 3
A
86 90anti-parallel
Strand 4
A
98 102anti-parallel
Strand 5
A
105 109anti-parallel
Strand 6
B
307 313anti-parallel
Strand 7
B
295 301anti-parallel
Strand 8
B
286 292anti-parallel
Strand 9
B
321 326anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 70first strand
Strand 2
A
32 38anti-parallel
Strand 3
A
41 47anti-parallel
Strand 4
A
51 58anti-parallel
Strand 5
A
236 241anti-parallel
Strand 6
A
228 233anti-parallel
Strand 7
A
219 224anti-parallel
Strand 8
A
129 132anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 202first strand
Strand 2
A
158 166anti-parallel
Strand 3
A
169 177anti-parallel
Strand 4
A
181 188anti-parallel
Strand 5
A
360 367anti-parallel
Strand 6
A
353 357anti-parallel
Strand 7
A
341 346anti-parallel
Strand 8
A
260 265anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 326first strand
Strand 2
A
286 292anti-parallel
Strand 3
A
295 301anti-parallel
Strand 4
A
307 313anti-parallel
Strand 5
B
105 109anti-parallel
Strand 6
B
98 102anti-parallel
Strand 7
B
86 90anti-parallel
Strand 8
B
2 6anti-parallel
Strand 9
B
60 63anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 70first strand
Strand 2
B
32 38anti-parallel
Strand 3
B
41 47anti-parallel
Strand 4
B
51 58anti-parallel
Strand 5
B
236 241anti-parallel
Strand 6
B
228 233anti-parallel
Strand 7
B
219 224anti-parallel
Strand 8
B
129 132anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
199 202first strand
Strand 2
B
158 166anti-parallel
Strand 3
B
169 177anti-parallel
Strand 4
B
181 188anti-parallel
Strand 5
B
360 367anti-parallel
Strand 6
B
353 357anti-parallel
Strand 7
B
341 346anti-parallel
Strand 8
B
260 265anti-parallel
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