Analysis of interatomic Contacts of Structural Units in PDB entry:
5WCH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5WCH entry

There are 4 chains in PDB entry 5WCH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 1555	SER 1970
B	GLY 1555	THR 1958
C	GLY 1555	SER 1970
D	GLY 1555	ASP 1957

There are 46 helices in PDB entry 5WCH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1565	1577	Right-handed alpha
Helix 2	AA2	A	1578	1587	Right-handed alpha
Helix 3	AA3	A	1633	1657	Right-handed alpha
Helix 4	AA4	A	1664	1671	Right-handed alpha
Helix 5	AA5	A	1685	1704	Right-handed alpha
Helix 6	AA6	A	1708	1715	Right-handed alpha
Helix 7	AA7	A	1749	1760	Right-handed alpha
Helix 8	AA8	A	1764	1768	Right-handed 310
Helix 9	AA9	A	1825	1827	Right-handed 310
Helix 10	AB1	A	1828	1837	Right-handed alpha
Helix 11	AB2	A	1912	1921	Right-handed alpha
Helix 12	AB3	A	1962	1966	Right-handed 310
Helix 13	AB4	B	1565	1577	Right-handed alpha
Helix 14	AB5	B	1578	1587	Right-handed alpha
Helix 15	AB6	B	1634	1657	Right-handed alpha
Helix 16	AB7	B	1664	1671	Right-handed alpha
Helix 17	AB8	B	1685	1704	Right-handed alpha
Helix 18	AB9	B	1708	1715	Right-handed alpha
Helix 19	AC1	B	1749	1760	Right-handed alpha
Helix 20	AC2	B	1764	1768	Right-handed 310
Helix 21	AC3	B	1825	1827	Right-handed 310
Helix 22	AC4	B	1828	1837	Right-handed alpha
Helix 23	AC5	B	1912	1921	Right-handed alpha
Helix 24	AC6	C	1565	1577	Right-handed alpha
Helix 25	AC7	C	1578	1587	Right-handed alpha
Helix 26	AC8	C	1634	1657	Right-handed alpha
Helix 27	AC9	C	1664	1671	Right-handed alpha
Helix 28	AD1	C	1685	1704	Right-handed alpha
Helix 29	AD2	C	1708	1715	Right-handed alpha
Helix 30	AD3	C	1749	1760	Right-handed alpha
Helix 31	AD4	C	1764	1768	Right-handed 310
Helix 32	AD5	C	1825	1827	Right-handed 310
Helix 33	AD6	C	1828	1835	Right-handed alpha
Helix 34	AD7	C	1912	1921	Right-handed alpha
Helix 35	AD8	C	1962	1966	Right-handed 310
Helix 36	AD9	D	1565	1577	Right-handed alpha
Helix 37	AE1	D	1578	1586	Right-handed alpha
Helix 38	AE2	D	1633	1656	Right-handed alpha
Helix 39	AE3	D	1664	1671	Right-handed alpha
Helix 40	AE4	D	1685	1704	Right-handed alpha
Helix 41	AE5	D	1708	1715	Right-handed alpha
Helix 42	AE6	D	1749	1760	Right-handed alpha
Helix 43	AE7	D	1764	1768	Right-handed 310
Helix 44	AE8	D	1825	1827	Right-handed 310
Helix 45	AE9	D	1828	1836	Right-handed alpha
Helix 46	AF1	D	1912	1921	Right-handed alpha

There are 32 sheets in PDB entry 5WCH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1558	1559	first strand
Strand 2	A	1661	1662	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1672	1673	first strand
Strand 2	A	1676	1677	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1730	1737	first strand
Strand 2	A	1716	1724	anti-parallel
Strand 3	A	1780	1788	anti-parallel
Strand 4	A	1761	1763	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1739	1742	first strand
Strand 2	A	1792	1797	parallel
Strand 3	A	1946	1955	anti-parallel
Strand 4	A	1862	1872	anti-parallel
Strand 5	A	1821	1823	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1739	1742	first strand
Strand 2	A	1792	1797	parallel
Strand 3	A	1946	1955	anti-parallel
Strand 4	A	1862	1872	anti-parallel
Strand 5	A	1879	1885	anti-parallel
Strand 6	A	1897	1901	anti-parallel
Strand 7	A	1904	1907	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1769	1771	first strand
Strand 2	A	1776	1778	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1800	1803	first strand
Strand 2	A	1808	1811	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1924	1931	first strand
Strand 2	A	1936	1943	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1558	1559	first strand
Strand 2	B	1661	1662	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1672	1673	first strand
Strand 2	B	1676	1677	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1730	1737	first strand
Strand 2	B	1716	1724	anti-parallel
Strand 3	B	1780	1788	anti-parallel
Strand 4	B	1761	1763	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1739	1742	first strand
Strand 2	B	1792	1797	parallel
Strand 3	B	1946	1955	anti-parallel
Strand 4	B	1862	1872	anti-parallel
Strand 5	B	1821	1823	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1739	1742	first strand
Strand 2	B	1792	1797	parallel
Strand 3	B	1946	1955	anti-parallel
Strand 4	B	1862	1872	anti-parallel
Strand 5	B	1879	1885	anti-parallel
Strand 6	B	1897	1901	anti-parallel
Strand 7	B	1904	1907	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1769	1771	first strand
Strand 2	B	1776	1778	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1800	1803	first strand
Strand 2	B	1808	1811	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1924	1931	first strand
Strand 2	B	1936	1943	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1558	1559	first strand
Strand 2	C	1661	1662	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1672	1673	first strand
Strand 2	C	1676	1677	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1730	1737	first strand
Strand 2	C	1716	1724	anti-parallel
Strand 3	C	1780	1788	anti-parallel
Strand 4	C	1761	1763	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1740	1742	first strand
Strand 2	C	1792	1797	parallel
Strand 3	C	1946	1955	anti-parallel
Strand 4	C	1862	1872	anti-parallel
Strand 5	C	1821	1823	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1740	1742	first strand
Strand 2	C	1792	1797	parallel
Strand 3	C	1946	1955	anti-parallel
Strand 4	C	1862	1872	anti-parallel
Strand 5	C	1879	1885	anti-parallel
Strand 6	C	1897	1901	anti-parallel
Strand 7	C	1904	1907	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1769	1771	first strand
Strand 2	C	1776	1778	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1800	1803	first strand
Strand 2	C	1808	1811	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1924	1930	first strand
Strand 2	C	1937	1943	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1558	1559	first strand
Strand 2	D	1661	1662	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1672	1673	first strand
Strand 2	D	1676	1677	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1730	1737	first strand
Strand 2	D	1716	1724	anti-parallel
Strand 3	D	1780	1788	anti-parallel
Strand 4	D	1761	1763	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1739	1742	first strand
Strand 2	D	1792	1797	parallel
Strand 3	D	1946	1955	anti-parallel
Strand 4	D	1862	1872	anti-parallel
Strand 5	D	1821	1823	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1739	1742	first strand
Strand 2	D	1792	1797	parallel
Strand 3	D	1946	1955	anti-parallel
Strand 4	D	1862	1872	anti-parallel
Strand 5	D	1879	1885	anti-parallel
Strand 6	D	1897	1900	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1769	1771	first strand
Strand 2	D	1776	1778	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1800	1803	first strand
Strand 2	D	1808	1811	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1924	1931	first strand
Strand 2	D	1936	1943	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5WCH

Analysis of interatomic Contacts of Structural Units in PDB entry:
5WCH