Analysis of interatomic Contacts of Structural Units in PDB entry:
5WCM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WCM entry

There are 2 chains in PDB entry 5WCM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 32LYS 294
B
 LYS 32LYS 294
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5WCM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 36Right-handed 310
Helix 2
AA2
A
73 75Right-handed 310
Helix 3
AA3
A
76 87Right-handed alpha
Helix 4
AA4
A
90 92Right-handed 310
Helix 5
AA5
A
103 108Right-handed alpha
Helix 6
AA6
A
109 118Right-handed alpha
Helix 7
AA7
A
127 134Right-handed alpha
Helix 8
AA8
A
142 146Right-handed 310
Helix 9
AA9
A
218 233Right-handed alpha
Helix 10
AB1
A
242 246Right-handed 310
Helix 11
AB2
A
247 255Right-handed alpha
Helix 12
AB3
A
267 291Right-handed alpha
Helix 13
AB4
B
73 75Right-handed 310
Helix 14
AB5
B
76 87Right-handed alpha
Helix 15
AB6
B
90 92Right-handed 310
Helix 16
AB7
B
103 108Right-handed alpha
Helix 17
AB8
B
109 118Right-handed alpha
Helix 18
AB9
B
127 134Right-handed alpha
Helix 19
AC1
B
142 146Right-handed 310
Helix 20
AC2
B
218 233Right-handed alpha
Helix 21
AC3
B
242 246Right-handed 310
Helix 22
AC4
B
247 254Right-handed alpha
Helix 23
AC5
B
267 291Right-handed alpha
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There are 4 sheets in PDB entry 5WCM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 44first strand
Strand 2
A
47 49anti-parallel
Strand 3
A
58 62anti-parallel
Strand 4
A
65 69anti-parallel
Strand 5
A
94 98parallel
Strand 6
A
120 124parallel
Strand 7
A
154 156parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 164first strand
Strand 2
A
167 173anti-parallel
Strand 3
A
182 190anti-parallel
Strand 4
A
193 199anti-parallel
Strand 5
A
237 239parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 44first strand
Strand 2
B
47 49anti-parallel
Strand 3
B
58 62anti-parallel
Strand 4
B
65 69anti-parallel
Strand 5
B
94 98parallel
Strand 6
B
120 124parallel
Strand 7
B
154 156parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
161 164first strand
Strand 2
B
167 173anti-parallel
Strand 3
B
182 190anti-parallel
Strand 4
B
193 199anti-parallel
Strand 5
B
237 239parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il