Analysis of interatomic Contacts of Structural Units in PDB entry:
5WCX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WCX entry

There are 2 chains in PDB entry 5WCX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 442ILE 822
B
 GLY 442LEU 697
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 5WCX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
451 471Right-handed alpha
Helix 2
AA2
A
476 480Right-handed 310
Helix 3
AA3
A
492 496Right-handed 310
Helix 4
AA4
A
506 516Right-handed alpha
Helix 5
AA5
A
529 540Right-handed alpha
Helix 6
AA6
A
542 546Right-handed 310
Helix 7
AA7
A
552 557Right-handed alpha
Helix 8
AA8
A
558 561Right-handed 310
Helix 9
AA9
A
566 571Right-handed 310
Helix 10
AB1
A
572 574Right-handed 310
Helix 11
AB2
A
585 587Right-handed 310
Helix 12
AB3
A
588 596Right-handed alpha
Helix 13
AB4
A
622 634Right-handed alpha
Helix 14
AB5
A
669 699Right-handed alpha
Helix 15
AB6
A
718 723Right-handed 310
Helix 16
AB7
A
725 729Right-handed 310
Helix 17
AB8
A
754 763Right-handed alpha
Helix 18
AB9
A
768 781Right-handed alpha
Helix 19
AC1
A
789 808Right-handed alpha
Helix 20
AC2
A
811 816Right-handed 310
Helix 21
AC3
B
451 471Right-handed alpha
Helix 22
AC4
B
476 480Right-handed 310
Helix 23
AC5
B
492 496Right-handed 310
Helix 24
AC6
B
506 516Right-handed alpha
Helix 25
AC7
B
529 540Right-handed alpha
Helix 26
AC8
B
542 546Right-handed 310
Helix 27
AC9
B
552 557Right-handed alpha
Helix 28
AD1
B
558 561Right-handed 310
Helix 29
AD2
B
566 571Right-handed 310
Helix 30
AD3
B
572 574Right-handed 310
Helix 31
AD4
B
585 587Right-handed 310
Helix 32
AD5
B
588 596Right-handed alpha
Helix 33
AD6
B
622 634Right-handed alpha
Helix 34
AD7
B
669 698Right-handed alpha
Helix 35
AD8
B
718 723Right-handed 310
Helix 36
AD9
B
725 729Right-handed 310
Helix 37
AE1
B
754 763Right-handed alpha
Helix 38
AE2
B
768 781Right-handed alpha
Helix 39
AE3
B
789 806Right-handed alpha
Helix 40
AE4
B
811 816Right-handed 310
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There are 6 sheets in PDB entry 5WCX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
600 605first strand
Strand 2
A
576 583parallel
Strand 3
A
641 645parallel
Strand 4
A
481 487parallel
Strand 5
A
704 710parallel
Strand 6
A
731 738anti-parallel
Strand 7
A
517 522anti-parallel
Strand 8
A
749 751parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
499 501first strand
Strand 2
A
663 665anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
616 617first strand
Strand 2
A
620 621anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
600 605first strand
Strand 2
B
576 583parallel
Strand 3
B
641 645parallel
Strand 4
B
481 487parallel
Strand 5
B
704 710parallel
Strand 6
B
731 738anti-parallel
Strand 7
B
517 522anti-parallel
Strand 8
B
749 751parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
499 501first strand
Strand 2
B
663 665anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
616 617first strand
Strand 2
B
620 621anti-parallel
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