Analysis of interatomic Contacts of Structural Units in PDB entry:
5WDD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WDD entry

There are 2 chains in PDB entry 5WDD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 21VAL 180
B
 PRO 22VAL 180
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5WDD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 47Right-handed alpha
Helix 2
AA2
A
63 82Right-handed alpha
Helix 3
AA3
A
82 87Right-handed alpha
Helix 4
AA4
A
88 93Right-handed alpha
Helix 5
AA5
A
99 116Right-handed alpha
Helix 6
AA6
A
120 141Right-handed alpha
Helix 7
AA7
A
142 144Right-handed 310
Helix 8
AA8
A
145 162Right-handed alpha
Helix 9
AA9
A
162 169Right-handed alpha
Helix 10
AB1
A
171 179Right-handed 310
Helix 11
AB2
B
23 46Right-handed alpha
Helix 12
AB3
B
62 76Right-handed alpha
Helix 13
AB4
B
77 82Right-handed alpha
Helix 14
AB5
B
82 93Right-handed alpha
Helix 15
AB6
B
99 115Right-handed alpha
Helix 16
AB7
B
120 141Right-handed alpha
Helix 17
AB8
B
145 162Right-handed alpha
Helix 18
AB9
B
162 170Right-handed alpha
Helix 19
AC1
B
171 179Right-handed 310
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There are no sheets in PDB entry 5WDD
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il