Analysis of interatomic Contacts of Structural Units in PDB entry:
5WDE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WDE entry

There is 1 chain in PDB entry 5WDE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 445SER 767
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5WDE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
456 460Right-handed 310
Helix 2
AA2
A
462 466Right-handed 310
Helix 3
AA3
A
501 507Right-handed alpha
Helix 4
AA4
A
509 518Right-handed alpha
Helix 5
AA5
A
533 539Right-handed alpha
Helix 6
AA6
A
546 561Right-handed alpha
Helix 7
AA7
A
618 633Right-handed alpha
Helix 8
AA8
A
643 647Right-handed 310
Helix 9
AA9
A
688 713Right-handed alpha
Helix 10
AB1
A
719 722Right-handed 310
Helix 11
AB2
A
723 729Right-handed alpha
Helix 12
AB3
A
730 733Right-handed 310
Helix 13
AB4
A
748 750Right-handed 310
Helix 14
AB5
A
751 767Right-handed alpha
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There are 4 sheets in PDB entry 5WDE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
494 496first strand
Strand 2
A
446 452parallel
Strand 3
A
738 745parallel
Strand 4
A
522 527parallel
Strand 5
A
665 674parallel
Strand 6
A
648 659anti-parallel
Strand 7
A
566 578anti-parallel
Strand 8
A
581 584anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
494 496first strand
Strand 2
A
446 452parallel
Strand 3
A
738 745parallel
Strand 4
A
522 527parallel
Strand 5
A
665 674parallel
Strand 6
A
648 659anti-parallel
Strand 7
A
566 578anti-parallel
Strand 8
A
614 615anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
469 471first strand
Strand 2
A
478 483anti-parallel
Strand 3
A
486 491anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
597 598first strand
Strand 2
A
606 607anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il