Analysis of interatomic Contacts of Structural Units in PDB entry:
5WDG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WDG entry

There are 2 chains in PDB entry 5WDG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 6HIS 554
B
 PRO -4GLU 146
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 5WDG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 24Right-handed alpha
Helix 2
AA2
A
37 46Right-handed alpha
Helix 3
AA3
A
56 72Right-handed alpha
Helix 4
AA4
A
82 87Right-handed alpha
Helix 5
AA5
A
88 99Right-handed alpha
Helix 6
AA6
A
110 114Right-handed 310
Helix 7
AA7
A
123 129Right-handed alpha
Helix 8
AA8
A
130 132Right-handed 310
Helix 9
AA9
A
140 142Right-handed 310
Helix 10
AB1
A
143 157Right-handed alpha
Helix 11
AB2
A
169 174Right-handed alpha
Helix 12
AB3
A
193 207Right-handed alpha
Helix 13
AB4
A
216 222Right-handed 310
Helix 14
AB5
A
223 235Right-handed alpha
Helix 15
AB6
A
242 245Right-handed 310
Helix 16
AB7
A
266 275Right-handed alpha
Helix 17
AB8
A
284 288Right-handed 310
Helix 18
AB9
A
289 293Right-handed 310
Helix 19
AC1
A
323 334Right-handed alpha
Helix 20
AC2
A
342 360Right-handed alpha
Helix 21
AC3
A
372 384Right-handed alpha
Helix 22
AC4
A
395 404Right-handed alpha
Helix 23
AC5
A
405 408Right-handed 310
Helix 24
AC6
A
424 436Right-handed alpha
Helix 25
AC7
A
447 454Right-handed alpha
Helix 26
AC8
A
456 464Right-handed alpha
Helix 27
AC9
A
477 489Right-handed alpha
Helix 28
AD1
A
500 508Right-handed alpha
Helix 29
AD2
A
520 530Right-handed alpha
Helix 30
AD3
A
542 544Right-handed 310
Helix 31
AD4
A
545 551Right-handed alpha
Helix 32
AD5
B
12 24Right-handed alpha
Helix 33
AD6
B
37 44Right-handed alpha
Helix 34
AD7
B
45 47Right-handed 310
Helix 35
AD8
B
56 72Right-handed alpha
Helix 36
AD9
B
82 87Right-handed alpha
Helix 37
AE1
B
88 99Right-handed alpha
Helix 38
AE2
B
110 115Right-handed 310
Helix 39
AE3
B
123 129Right-handed alpha
Helix 40
AE4
B
130 132Right-handed 310
Helix 41
AE5
B
140 142Right-handed 310
Helix 42
AE6
B
143 157Right-handed alpha
Helix 43
AE7
B
169 174Right-handed alpha
Helix 44
AE8
B
193 207Right-handed alpha
Helix 45
AE9
B
216 222Right-handed 310
Helix 46
AF1
B
223 235Right-handed alpha
Helix 47
AF2
B
242 245Right-handed 310
Helix 48
AF3
B
266 275Right-handed alpha
Helix 49
AF4
B
284 288Right-handed 310
Helix 50
AF5
B
289 293Right-handed 310
Helix 51
AF6
B
323 334Right-handed alpha
Helix 52
AF7
B
342 356Right-handed alpha
Helix 53
AF8
B
372 384Right-handed alpha
Helix 54
AF9
B
395 404Right-handed alpha
Helix 55
AG1
B
405 408Right-handed 310
Helix 56
AG2
B
424 436Right-handed alpha
Helix 57
AG3
B
447 454Right-handed alpha
Helix 58
AG4
B
456 464Right-handed alpha
Helix 59
AG5
B
477 489Right-handed alpha
Helix 60
AG6
B
500 508Right-handed alpha
Helix 61
AG7
B
517 519Right-handed 310
Helix 62
AG8
B
520 530Right-handed alpha
Helix 63
AG9
B
542 544Right-handed 310
Helix 64
AH1
B
545 551Right-handed alpha
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There are 8 sheets in PDB entry 5WDG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 10first strand
Strand 2
A
176 179anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 53first strand
Strand 2
A
28 31parallel
Strand 3
A
75 79parallel
Strand 4
A
102 108parallel
Strand 5
A
162 168parallel
Strand 6
A
134 137parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 259first strand
Strand 2
A
238 240parallel
Strand 3
A
210 214parallel
Strand 4
A
277 281parallel
Strand 5
A
299 304parallel
Strand 6
A
318 321parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
412 414first strand
Strand 2
A
389 392parallel
Strand 3
A
441 446parallel
Strand 4
A
467 473parallel
Strand 5
A
535 540parallel
Strand 6
A
511 514parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 10first strand
Strand 2
B
176 178anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 53first strand
Strand 2
B
28 31parallel
Strand 3
B
75 79parallel
Strand 4
B
102 108parallel
Strand 5
B
162 168parallel
Strand 6
B
134 137parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
256 259first strand
Strand 2
B
238 240parallel
Strand 3
B
210 214parallel
Strand 4
B
277 281parallel
Strand 5
B
299 304parallel
Strand 6
B
318 321parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
412 414first strand
Strand 2
B
388 392parallel
Strand 3
B
440 446parallel
Strand 4
B
467 473parallel
Strand 5
B
535 540parallel
Strand 6
B
511 514parallel
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