Analysis of interatomic Contacts of Structural Units in PDB entry:
5WDH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WDH entry

There is 1 chain in PDB entry 5WDH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 309CYS 663
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5WDH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
383 390Right-handed alpha
Helix 2
AA2
A
391 397Right-handed alpha
Helix 3
AA3
A
398 401Right-handed 310
Helix 4
AA4
A
415 421Right-handed alpha
Helix 5
AA5
A
427 431Right-handed 310
Helix 6
AA6
A
432 450Right-handed alpha
Helix 7
AA7
A
509 527Right-handed alpha
Helix 8
AA8
A
534 538Right-handed 310
Helix 9
AA9
A
596 608Right-handed alpha
Helix 10
AB1
A
614 617Right-handed 310
Helix 11
AB2
A
618 625Right-handed alpha
Helix 12
AB3
A
626 628Right-handed 310
Helix 13
AB4
A
643 645Right-handed 310
Helix 14
AB5
A
646 663Right-handed alpha
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There are 4 sheets in PDB entry 5WDH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 378first strand
Strand 2
A
311 317parallel
Strand 3
A
633 640parallel
Strand 4
A
404 409parallel
Strand 5
A
556 565parallel
Strand 6
A
539 550anti-parallel
Strand 7
A
453 465anti-parallel
Strand 8
A
468 471anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 378first strand
Strand 2
A
311 317parallel
Strand 3
A
633 640parallel
Strand 4
A
404 409parallel
Strand 5
A
556 565parallel
Strand 6
A
539 550anti-parallel
Strand 7
A
453 465anti-parallel
Strand 8
A
505 506anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 333first strand
Strand 2
A
347 350anti-parallel
Strand 3
A
371 373anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
487 489first strand
Strand 2
A
497 499anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il