Analysis of interatomic Contacts of Structural Units in PDB entry:
5WDI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WDI entry

There are 2 chains in PDB entry 5WDI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 395ILE 658
B
 ALA 394ILE 658
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5WDI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
406 412Right-handed alpha
Helix 2
AA2
A
414 419Right-handed alpha
Helix 3
AA3
A
444 448Right-handed 310
Helix 4
AA4
A
454 472Right-handed alpha
Helix 5
AA5
A
483 498Right-handed alpha
Helix 6
AA6
A
509 512Right-handed 310
Helix 7
AA7
A
514 518Right-handed 310
Helix 8
AA8
A
528 535Right-handed alpha
Helix 9
AA9
A
548 552Right-handed 310
Helix 10
AB1
A
557 575Right-handed alpha
Helix 11
AB2
A
590 595Right-handed alpha
Helix 12
AB3
A
596 601Right-handed alpha
Helix 13
AB4
A
606 616Right-handed alpha
Helix 14
AB5
A
653 658Right-handed 310
Helix 15
AB6
B
406 412Right-handed alpha
Helix 16
AB7
B
414 419Right-handed alpha
Helix 17
AB8
B
444 450Right-handed 310
Helix 18
AB9
B
454 472Right-handed alpha
Helix 19
AC1
B
483 498Right-handed alpha
Helix 20
AC2
B
509 512Right-handed 310
Helix 21
AC3
B
514 518Right-handed 310
Helix 22
AC4
B
528 535Right-handed alpha
Helix 23
AC5
B
548 552Right-handed 310
Helix 24
AC6
B
557 575Right-handed alpha
Helix 25
AC7
B
590 595Right-handed alpha
Helix 26
AC8
B
596 601Right-handed alpha
Helix 27
AC9
B
606 616Right-handed alpha
Helix 28
AD1
B
653 658Right-handed 310
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There are 2 sheets in PDB entry 5WDI. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
505 507first strand
Strand 2
A
475 480parallel
Strand 3
A
582 587parallel
Strand 4
A
397 402parallel
Strand 5
A
622 628anti-parallel
Strand 6
A
633 637anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
505 507first strand
Strand 2
B
475 480parallel
Strand 3
B
582 587parallel
Strand 4
B
397 402parallel
Strand 5
B
622 628anti-parallel
Strand 6
B
633 637anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il