Analysis of interatomic Contacts of Structural Units in PDB entry:
5WDY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WDY entry

There are 2 chains in PDB entry 5WDY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 208GLU 481
B
 GLU 206GLN 480
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5WDY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
260 275Right-handed alpha
Helix 2
AA2
A
308 314Right-handed alpha
Helix 3
AA3
A
320 340Right-handed alpha
Helix 4
AA4
A
391 398Right-handed alpha
Helix 5
AA5
A
401 418Right-handed alpha
Helix 6
AA6
A
427 437Right-handed alpha
Helix 7
AA7
A
441 447Right-handed 310
Helix 8
AA8
A
449 460Right-handed alpha
Helix 9
AA9
A
463 467Right-handed 310
Helix 10
AB1
A
469 475Right-handed alpha
Helix 11
AB2
B
207 211Right-handed 310
Helix 12
AB3
B
260 274Right-handed alpha
Helix 13
AB4
B
308 314Right-handed alpha
Helix 14
AB5
B
320 340Right-handed alpha
Helix 15
AB6
B
391 396Right-handed alpha
Helix 16
AB7
B
401 418Right-handed alpha
Helix 17
AB8
B
427 438Right-handed alpha
Helix 18
AB9
B
443 447Right-handed 310
Helix 19
AC1
B
449 458Right-handed alpha
Helix 20
AC2
B
463 467Right-handed 310
Helix 21
AC3
B
469 475Right-handed alpha
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There are 6 sheets in PDB entry 5WDY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 229first strand
Strand 2
A
234 240anti-parallel
Strand 3
A
246 252anti-parallel
Strand 4
A
297 302anti-parallel
Strand 5
A
283 288anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
345 346first strand
Strand 2
A
373 374anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
355 358first strand
Strand 2
A
363 366anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
213 214first strand
Strand 2
B
220 229anti-parallel
Strand 3
B
234 240anti-parallel
Strand 4
B
245 252anti-parallel
Strand 5
B
295 302anti-parallel
Strand 6
B
283 290anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
345 346first strand
Strand 2
B
373 374anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
355 358first strand
Strand 2
B
363 366anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il