Analysis of interatomic Contacts of Structural Units in PDB entry:
5WEA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WEA entry

There are 2 chains in PDB entry 5WEA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 23ALA 859
B
 A 1 U 8
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 5WEA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
67 82Right-handed alpha
Helix 2
AA2
A
140 147Right-handed alpha
Helix 3
AA3
A
155 174Right-handed alpha
Helix 4
AA4
A
229 237Right-handed alpha
Helix 5
AA5
A
251 263Right-handed alpha
Helix 6
AA6
A
308 315Right-handed alpha
Helix 7
AA7
A
363 368Right-handed alpha
Helix 8
AA8
A
371 387Right-handed alpha
Helix 9
AA9
A
388 390Right-handed 310
Helix 10
AB1
A
391 398Right-handed alpha
Helix 11
AB2
A
463 482Right-handed alpha
Helix 12
AB3
A
500 512Right-handed alpha
Helix 13
AB4
A
527 539Right-handed alpha
Helix 14
AB5
A
549 554Right-handed alpha
Helix 15
AB6
A
560 571Right-handed alpha
Helix 16
AB7
A
584 588Right-handed 310
Helix 17
AB8
A
641 658Right-handed alpha
Helix 18
AB9
A
672 674Right-handed 310
Helix 19
AC1
A
675 695Right-handed alpha
Helix 20
AC2
A
719 723Right-handed 310
Helix 21
AC3
A
775 789Right-handed alpha
Helix 22
AC4
A
800 815Right-handed alpha
Helix 23
AC5
A
840 847Right-handed alpha
Helix 24
AC6
A
849 854Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 5WEA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
625 632first strand
Strand 2
A
610 617anti-parallel
Strand 3
A
591 599anti-parallel
Strand 4
A
663 669parallel
Strand 5
A
701 708parallel
Strand 6
A
763 770anti-parallel
Strand 7
A
747 751anti-parallel
Strand 8
A
734 736anti-parallel
Strand 9
A
406 412anti-parallel
Strand 10
A
36 42anti-parallel
Strand 11
A
715 717anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 177first strand
Strand 2
A
180 182anti-parallel
Strand 3
A
196 208anti-parallel
Strand 4
A
213 225anti-parallel
Strand 5
A
44 48anti-parallel
Strand 6
A
400 401anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 94first strand
Strand 2
A
99 102anti-parallel
Strand 3
A
53 62anti-parallel
Strand 4
A
129 139anti-parallel
Strand 5
A
113 116anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 340first strand
Strand 2
A
326 330anti-parallel
Strand 3
A
279 288anti-parallel
Strand 4
A
266 269anti-parallel
Strand 5
A
344 346anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 297first strand
Strand 2
A
303 307anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
427 428first strand
Strand 2
A
418 419anti-parallel
Strand 3
A
577 578anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
492 494first strand
Strand 2
A
451 455parallel
Strand 3
A
517 522parallel
Strand 4
A
543 548parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il