Analysis of interatomic Contacts of Structural Units in PDB entry:
5WF5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WF5 entry

There is 1 chain in PDB entry 5WF5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 3VAL 307
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 5WF5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 34Right-handed alpha
Helix 2
AA2
A
35 38Right-handed 310
Helix 3
AA3
A
40 58Right-handed alpha
Helix 4
AA4
A
58 66Right-handed alpha
Helix 5
AA5
A
74 108Right-handed alpha
Helix 6
AA6
A
108 116Right-handed alpha
Helix 7
AA7
A
117 137Right-handed alpha
Helix 8
AA8
A
138 142Right-handed 310
Helix 9
AA9
A
167 172Right-handed alpha
Helix 10
AB1
A
173 179Right-handed alpha
Helix 11
AB2
A
180 186Right-handed alpha
Helix 12
AB3
A
186 205Right-handed alpha
Helix 13
AB4
A
1002 1011Right-handed alpha
Helix 14
AB5
A
1038 1051Right-handed alpha
Helix 15
AB6
A
1059 1080Right-handed alpha
Helix 16
AB7
A
1084 1090Right-handed alpha
Helix 17
AB8
A
1092 1113Right-handed alpha
Helix 18
AB9
A
1114 1123Right-handed alpha
Helix 19
AC1
A
1125 1134Right-handed alpha
Helix 20
AC2
A
1136 1142Right-handed alpha
Helix 21
AC3
A
1142 1156Right-handed alpha
Helix 22
AC4
A
1158 224Right-handed alpha
Helix 23
AC5
A
225 259Right-handed alpha
Helix 24
AC6
A
266 291Right-handed alpha
Helix 25
AC7
A
292 307Right-handed alpha
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There are 2 sheets in PDB entry 5WF5. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 73first strand
Strand 2
A
163 165anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1014 1019first strand
Strand 2
A
1025 1028anti-parallel
Strand 3
A
1031 1034anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il