Analysis of interatomic Contacts of Structural Units in PDB entry:
5WFD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5WFD entry

There are 2 chains in PDB entry 5WFD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 7	LEU 558
B	GLU 196	GLU 2684

There are 39 helices in PDB entry 5WFD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	169	173	Right-handed 310
Helix 2	AA2	A	281	285	Right-handed 310
Helix 3	AA3	A	357	377	Right-handed alpha
Helix 4	AA4	A	391	400	Right-handed alpha
Helix 5	AA5	A	401	403	Right-handed 310
Helix 6	AA6	A	491	503	Right-handed alpha
Helix 7	AA7	B	198	211	Right-handed alpha
Helix 8	AA8	B	211	231	Right-handed alpha
Helix 9	AA9	B	361	378	Right-handed alpha
Helix 10	AB1	B	380	389	Right-handed alpha
Helix 11	AB2	B	394	405	Right-handed alpha
Helix 12	AB3	B	406	409	Right-handed 310
Helix 13	AB4	B	415	424	Right-handed alpha
Helix 14	AB5	B	430	449	Right-handed alpha
Helix 15	AB6	B	458	464	Right-handed alpha
Helix 16	AB7	B	469	474	Right-handed 310
Helix 17	AB8	B	493	500	Right-handed alpha
Helix 18	AB9	B	500	507	Right-handed alpha
Helix 19	AC1	B	531	536	Right-handed 310
Helix 20	AC2	B	537	551	Right-handed alpha
Helix 21	AC3	B	591	606	Right-handed alpha
Helix 22	AC4	B	612	621	Right-handed alpha
Helix 23	AC5	B	626	631	Right-handed alpha
Helix 24	AC6	B	666	671	Right-handed alpha
Helix 25	AC7	B	675	679	Right-handed 310
Helix 26	AC8	B	692	696	Right-handed 310
Helix 27	AC9	B	697	702	Right-handed alpha
Helix 28	AD1	B	746	751	Right-handed alpha
Helix 29	AD2	B	764	769	Right-handed alpha
Helix 30	AD3	B	770	774	Right-handed 310
Helix 31	AD4	B	778	782	Right-handed 310
Helix 32	AD5	B	787	792	Right-handed alpha
Helix 33	AD6	B	833	843	Right-handed alpha
Helix 34	AD7	B	874	879	Right-handed 310
Helix 35	AD8	B	2582	2595	Right-handed alpha
Helix 36	AD9	B	2600	2617	Right-handed alpha
Helix 37	AE1	B	2624	2641	Right-handed alpha
Helix 38	AE2	B	2643	2660	Right-handed alpha
Helix 39	AE3	B	2664	2683	Right-handed alpha

There are 16 sheets in PDB entry 5WFD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	525	530	first strand
Strand 2	A	536	541	anti-parallel
Strand 3	A	545	550	anti-parallel
Strand 4	A	13	20	anti-parallel
Strand 5	B	264	273	anti-parallel
Strand 6	B	278	279	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	525	530	first strand
Strand 2	A	536	541	anti-parallel
Strand 3	A	545	550	anti-parallel
Strand 4	A	13	20	anti-parallel
Strand 5	B	264	273	anti-parallel
Strand 6	B	284	289	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	45	first strand
Strand 2	A	56	60	anti-parallel
Strand 3	A	64	70	anti-parallel
Strand 4	A	81	89	anti-parallel
Strand 5	B	291	293	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	102	first strand
Strand 2	A	109	115	anti-parallel
Strand 3	A	120	124	anti-parallel
Strand 4	A	129	134	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	147	first strand
Strand 2	A	150	158	anti-parallel
Strand 3	A	163	167	anti-parallel
Strand 4	A	177	181	anti-parallel
Strand 5	A	228	230	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	190	195	first strand
Strand 2	A	201	206	anti-parallel
Strand 3	A	211	215	anti-parallel
Strand 4	A	235	237	anti-parallel
Strand 5	A	295	297	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	251	first strand
Strand 2	A	254	259	anti-parallel
Strand 3	A	264	270	anti-parallel
Strand 4	A	312	319	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	332	334	first strand
Strand 2	A	342	346	anti-parallel
Strand 3	A	351	356	anti-parallel
Strand 4	A	515	518	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	381	385	first strand
Strand 2	A	404	408	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	308	309	first strand
Strand 2	B	872	873	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	314	315	first strand
Strand 2	B	829	832	parallel
Strand 3	B	865	868	anti-parallel
Strand 4	B	856	860	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	520	521	first strand
Strand 2	B	527	528	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	656	657	first strand
Strand 2	B	662	663	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	809	813	first strand
Strand 2	B	797	801	anti-parallel
Strand 3	B	2560	2561	anti-parallel
Strand 4	B	2568	2569	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	822	825	first strand
Strand 2	B	897	904	anti-parallel
Strand 3	B	887	894	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	880	881	first strand
Strand 2	B	915	916	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5WFD

Analysis of interatomic Contacts of Structural Units in PDB entry:
5WFD