Analysis of interatomic Contacts of Structural Units in PDB entry:
5WFI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5WFI entry

There are 4 chains in PDB entry 5WFI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 1609	ASN 1909
B	ASN 1609	LYS 1911
C	MET 1	GLY 76
D	MET 1	GLY 76

There are 25 helices in PDB entry 5WFI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1632	1638	Right-handed alpha
Helix 2	AA2	A	1653	1657	Right-handed 310
Helix 3	AA3	A	1668	1680	Right-handed alpha
Helix 4	AA4	A	1682	1696	Right-handed alpha
Helix 5	AA5	A	1715	1726	Right-handed alpha
Helix 6	AA6	A	1734	1746	Right-handed alpha
Helix 7	AA7	A	1749	1760	Right-handed alpha
Helix 8	AA8	A	1769	1781	Right-handed alpha
Helix 9	AA9	A	1805	1809	Right-handed alpha
Helix 10	AB1	A	1816	1823	Right-handed alpha
Helix 11	AB2	B	1633	1638	Right-handed alpha
Helix 12	AB3	B	1653	1657	Right-handed 310
Helix 13	AB4	B	1668	1680	Right-handed alpha
Helix 14	AB5	B	1682	1696	Right-handed alpha
Helix 15	AB6	B	1715	1726	Right-handed alpha
Helix 16	AB7	B	1734	1746	Right-handed alpha
Helix 17	AB8	B	1749	1760	Right-handed alpha
Helix 18	AB9	B	1769	1781	Right-handed alpha
Helix 19	AC1	B	1805	1809	Right-handed alpha
Helix 20	AC2	B	1816	1823	Right-handed alpha
Helix 21	AC3	C	22	35	Right-handed alpha
Helix 22	AC4	C	37	39	Right-handed 310
Helix 23	AC5	C	56	60	Right-handed 310
Helix 24	AC6	D	22	35	Right-handed alpha
Helix 25	AC7	D	37	39	Right-handed 310

There are 10 sheets in PDB entry 5WFI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1623	1628	first strand
Strand 2	A	1610	1616	anti-parallel
Strand 3	A	1660	1663	parallel
Strand 4	A	1640	1642	anti-parallel
Strand 5	A	1645	1646	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1700	1703	first strand
Strand 2	A	1706	1709	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1797	1804	first strand
Strand 2	A	1787	1794	anti-parallel
Strand 3	A	1831	1841	anti-parallel
Strand 4	A	1824	1828	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1810	1812	first strand
Strand 2	A	1844	1852	parallel
Strand 3	A	1901	1907	anti-parallel
Strand 4	A	1862	1868	anti-parallel
Strand 5	A	1872	1878	anti-parallel
Strand 6	A	1884	1887	anti-parallel
Strand 7	A	1890	1893	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1622	1628	first strand
Strand 2	B	1610	1616	anti-parallel
Strand 3	B	1660	1663	parallel
Strand 4	B	1640	1642	anti-parallel
Strand 5	B	1645	1646	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1700	1703	first strand
Strand 2	B	1706	1709	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1797	1804	first strand
Strand 2	B	1787	1794	anti-parallel
Strand 3	B	1831	1841	anti-parallel
Strand 4	B	1824	1828	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1810	1812	first strand
Strand 2	B	1845	1852	parallel
Strand 3	B	1901	1906	anti-parallel
Strand 4	B	1862	1868	anti-parallel
Strand 5	B	1872	1878	anti-parallel
Strand 6	B	1884	1887	anti-parallel
Strand 7	B	1890	1893	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	16	first strand
Strand 2	C	2	6	anti-parallel
Strand 3	C	66	71	parallel
Strand 4	C	41	45	anti-parallel
Strand 5	C	48	49	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	16	first strand
Strand 2	D	2	6	anti-parallel
Strand 3	D	66	71	parallel
Strand 4	D	41	45	anti-parallel
Strand 5	D	48	49	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5WFI

Analysis of interatomic Contacts of Structural Units in PDB entry:
5WFI