Analysis of interatomic Contacts of Structural Units in PDB entry:
5WFN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5WFN entry

There are 3 chains in PDB entry 5WFN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 6	PHE 375
C	PRO 196	GLU 541
B	ALA 6	LYS 84

There are 56 helices in PDB entry 5WFN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	60	Right-handed alpha
Helix 2	AA2	A	61	63	Right-handed 310
Helix 3	AA3	A	78	92	Right-handed alpha
Helix 4	AA4	A	97	101	Right-handed 310
Helix 5	AA5	A	112	125	Right-handed alpha
Helix 6	AA6	A	137	145	Right-handed alpha
Helix 7	AA7	A	181	197	Right-handed alpha
Helix 8	AA8	A	202	217	Right-handed alpha
Helix 9	AA9	A	222	233	Right-handed alpha
Helix 10	AB1	A	251	263	Right-handed alpha
Helix 11	AB2	A	264	268	Right-handed 310
Helix 12	AB3	A	273	284	Right-handed alpha
Helix 13	AB4	A	289	295	Right-handed alpha
Helix 14	AB5	A	301	305	Right-handed 310
Helix 15	AB6	A	308	321	Right-handed alpha
Helix 16	AB7	A	337	349	Right-handed alpha
Helix 17	AB8	A	350	353	Right-handed 310
Helix 18	AB9	A	359	366	Right-handed alpha
Helix 19	AC1	A	367	371	Right-handed 310
Helix 20	AC2	C	198	209	Right-handed alpha
Helix 21	AC3	C	225	238	Right-handed alpha
Helix 22	AC4	C	253	267	Right-handed alpha
Helix 23	AC5	C	281	292	Right-handed alpha
Helix 24	AC6	C	293	295	Right-handed 310
Helix 25	AC7	C	311	323	Right-handed alpha
Helix 26	AC8	C	337	364	Right-handed alpha
Helix 27	AC9	C	520	531	Right-handed alpha
Helix 28	AD1	C	533	537	Right-handed 310
Helix 29	AD2	B	55	60	Right-handed alpha
Helix 30	AD3	B	61	63	Right-handed 310
Helix 31	AD4	B	78	92	Right-handed alpha
Helix 32	AD5	B	97	101	Right-handed 310
Helix 33	AD6	B	112	125	Right-handed alpha
Helix 34	AD7	B	137	145	Right-handed alpha
Helix 35	AD8	B	181	197	Right-handed alpha
Helix 36	AD9	B	202	217	Right-handed alpha
Helix 37	AE1	B	222	233	Right-handed alpha
Helix 38	AE2	B	251	263	Right-handed alpha
Helix 39	AE3	B	264	268	Right-handed 310
Helix 40	AE4	B	273	284	Right-handed alpha
Helix 41	AE5	B	289	295	Right-handed alpha
Helix 42	AE6	B	301	305	Right-handed 310
Helix 43	AE7	B	308	321	Right-handed alpha
Helix 44	AE8	B	337	349	Right-handed alpha
Helix 45	AE9	B	350	353	Right-handed 310
Helix 46	AF1	B	359	366	Right-handed alpha
Helix 47	AF2	B	367	371	Right-handed 310
Helix 48	AF3	D	198	209	Right-handed alpha
Helix 49	AF4	D	225	238	Right-handed alpha
Helix 50	AF5	D	253	267	Right-handed alpha
Helix 51	AF6	D	281	292	Right-handed alpha
Helix 52	AF7	D	293	295	Right-handed 310
Helix 53	AF8	D	311	323	Right-handed alpha
Helix 54	AF9	D	337	364	Right-handed alpha
Helix 55	AG1	D	520	531	Right-handed alpha
Helix 56	AG2	D	533	537	Right-handed 310

There are 14 sheets in PDB entry 5WFN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	31	first strand
Strand 2	A	17	21	anti-parallel
Strand 3	A	8	12	anti-parallel
Strand 4	A	103	107	parallel
Strand 5	A	131	136	parallel
Strand 6	A	357	358	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	35	38	anti-parallel
Strand 3	A	65	68	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	72	first strand
Strand 2	A	75	76	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	170	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	176	178	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	170	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	150	155	anti-parallel
Strand 4	A	297	300	parallel
Strand 5	A	329	330	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	241	first strand
Strand 2	A	247	250	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	215	217	first strand
Strand 2	C	244	246	parallel
Strand 3	C	272	274	parallel
Strand 4	C	300	302	parallel
Strand 5	C	330	332	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	31	first strand
Strand 2	B	17	21	anti-parallel
Strand 3	B	8	12	anti-parallel
Strand 4	B	103	107	parallel
Strand 5	B	131	136	parallel
Strand 6	B	357	358	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	54	first strand
Strand 2	B	35	38	anti-parallel
Strand 3	B	65	68	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	72	first strand
Strand 2	B	75	76	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	170	first strand
Strand 2	B	160	166	anti-parallel
Strand 3	B	176	178	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	170	first strand
Strand 2	B	160	166	anti-parallel
Strand 3	B	150	155	anti-parallel
Strand 4	B	297	300	parallel
Strand 5	B	329	330	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	241	first strand
Strand 2	B	247	250	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	215	217	first strand
Strand 2	D	244	246	parallel
Strand 3	D	272	274	parallel
Strand 4	D	300	302	parallel
Strand 5	D	330	332	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5WFN

Analysis of interatomic Contacts of Structural Units in PDB entry:
5WFN