Analysis of interatomic Contacts of Structural Units in PDB entry:
5WFP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5WFP entry

There are 3 chains in PDB entry 5WFP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
Q	MET 1	HIS 166
R	GLY 0	HIS 166
N	GLN 566	ARG 1046

There are 38 helices in PDB entry 5WFP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	Q	15	26	Right-handed alpha
Helix 2	AA2	Q	61	66	Right-handed 310
Helix 3	AA3	Q	67	75	Right-handed alpha
Helix 4	AA4	Q	86	105	Right-handed alpha
Helix 5	AA5	Q	126	138	Right-handed alpha
Helix 6	AA6	Q	151	165	Right-handed alpha
Helix 7	AA7	R	17	25	Right-handed alpha
Helix 8	AA8	R	64	66	Right-handed 310
Helix 9	AA9	R	67	74	Right-handed alpha
Helix 10	AB1	R	86	92	Right-handed alpha
Helix 11	AB2	R	92	105	Right-handed alpha
Helix 12	AB3	R	126	138	Right-handed alpha
Helix 13	AB4	R	151	165	Right-handed alpha
Helix 14	AB5	N	575	579	Right-handed 310
Helix 15	AB6	N	605	614	Right-handed alpha
Helix 16	AB7	N	620	631	Right-handed alpha
Helix 17	AB8	N	632	634	Right-handed 310
Helix 18	AB9	N	636	649	Right-handed alpha
Helix 19	AC1	N	656	665	Right-handed alpha
Helix 20	AC2	N	671	681	Right-handed alpha
Helix 21	AC3	N	681	700	Right-handed alpha
Helix 22	AC4	N	701	706	Right-handed alpha
Helix 23	AC5	N	707	720	Right-handed alpha
Helix 24	AC6	N	726	742	Right-handed alpha
Helix 25	AC7	N	770	774	Right-handed 310
Helix 26	AC8	N	780	798	Right-handed alpha
Helix 27	AC9	N	800	808	Right-handed 310
Helix 28	AD1	N	813	818	Right-handed alpha
Helix 29	AD2	N	818	841	Right-handed alpha
Helix 30	AD3	N	844	865	Right-handed alpha
Helix 31	AD4	N	867	879	Right-handed alpha
Helix 32	AD5	N	880	885	Right-handed alpha
Helix 33	AD6	N	886	893	Right-handed alpha
Helix 34	AD7	N	894	920	Right-handed alpha
Helix 35	AD8	N	930	943	Right-handed alpha
Helix 36	AD9	N	958	975	Right-handed alpha
Helix 37	AE1	N	984	993	Right-handed alpha
Helix 38	AE2	N	1001	1017	Right-handed alpha

There are 3 sheets in PDB entry 5WFP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	37	46	first strand
Strand 2	Q	49	58	anti-parallel
Strand 3	Q	2	9	parallel
Strand 4	Q	77	83	parallel
Strand 5	Q	111	116	parallel
Strand 6	Q	141	143	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	41	46	first strand
Strand 2	R	49	57	anti-parallel
Strand 3	R	2	10	parallel
Strand 4	R	77	83	parallel
Strand 5	R	111	117	parallel
Strand 6	R	141	145	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	586	588	first strand
Strand 2	N	601	604	anti-parallel
Strand 3	N	953	957	anti-parallel
Strand 4	N	947	950	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5WFP

Analysis of interatomic Contacts of Structural Units in PDB entry:
5WFP