Analysis of interatomic Contacts of Structural Units in PDB entry:
5WGB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WGB entry

There are 3 chains in PDB entry 5WGB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 65LYS 431
B
 ALA 3SER 77
C
 ILE 3ASN 73
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5WGB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
70 82Right-handed alpha
Helix 2
AA2
A
98 115Right-handed alpha
Helix 3
AA3
A
117 119Right-handed 310
Helix 4
AA4
A
126 142Right-handed alpha
Helix 5
AA5
A
156 169Right-handed alpha
Helix 6
AA6
A
185 193Right-handed alpha
Helix 7
AA7
A
214 226Right-handed alpha
Helix 8
AA8
A
297 337Right-handed alpha
Helix 9
AA9
A
345 349Right-handed 310
Helix 10
AB1
A
415 428Right-handed alpha
Helix 11
AB2
B
6 21Right-handed alpha
Helix 12
AB3
B
25 43Right-handed alpha
Helix 13
AB4
B
48 76Right-handed alpha
Helix 14
AB5
C
7 16Right-handed alpha
Helix 15
AB6
C
35 51Right-handed alpha
Helix 16
AB7
C
64 73Right-handed alpha
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There are 2 sheets in PDB entry 5WGB. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 124first strand
Strand 2
A
266 270anti-parallel
Strand 3
A
251 255anti-parallel
Strand 4
A
228 232parallel
Strand 5
A
197 201parallel
Strand 6
A
148 152parallel
Strand 7
A
172 176parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 342first strand
Strand 2
A
353 357anti-parallel
Strand 3
A
405 409anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il