Analysis of interatomic Contacts of Structural Units in PDB entry:
5WGG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WGG entry

There are 2 chains in PDB entry 5WGG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1MET 450
B
 MET 1CYS 21
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5WGG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 35Right-handed alpha
Helix 2
AA2
A
41 49Right-handed alpha
Helix 3
AA3
A
54 71Right-handed alpha
Helix 4
AA4
A
126 141Right-handed alpha
Helix 5
AA5
A
155 158Right-handed 310
Helix 6
AA6
A
159 178Right-handed alpha
Helix 7
AA7
A
193 204Right-handed alpha
Helix 8
AA8
A
214 222Right-handed alpha
Helix 9
AA9
A
230 245Right-handed alpha
Helix 10
AB1
A
257 261Right-handed 310
Helix 11
AB2
A
263 273Right-handed alpha
Helix 12
AB3
A
294 296Right-handed 310
Helix 13
AB4
A
297 319Right-handed alpha
Helix 14
AB5
A
326 328Right-handed 310
Helix 15
AB6
A
338 343Right-handed alpha
Helix 16
AB7
A
362 366Right-handed 310
Helix 17
AB8
A
368 372Right-handed 310
Helix 18
AB9
A
382 391Right-handed alpha
Helix 19
AC1
A
397 402Right-handed alpha
Helix 20
AC2
A
413 422Right-handed alpha
Helix 21
AC3
A
428 449Right-handed alpha
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There are 2 sheets in PDB entry 5WGG. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 9first strand
Strand 2
A
12 17anti-parallel
Strand 3
A
23 26anti-parallel
Strand 4
B
4 6anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 324first strand
Strand 2
A
277 282parallel
Strand 3
A
250 256parallel
Strand 4
A
206 210parallel
Strand 5
A
180 187parallel
Strand 6
A
146 153parallel
Strand 7
A
95 101parallel
Strand 8
A
350 353parallel
Strand 9
A
358 360anti-parallel
Strand 10
A
374 375anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il