Analysis of interatomic Contacts of Structural Units in PDB entry:
5WHQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WHQ entry

There are 2 chains in PDB entry 5WHQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 7LEU 741
B
 ARG 7LEU 741
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 77 helices in PDB entry 5WHQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 22Right-handed alpha
Helix 2
AA2
A
28 32Right-handed 310
Helix 3
AA3
A
35 39Right-handed 310
Helix 4
AA4
A
46 53Right-handed alpha
Helix 5
AA5
A
55 69Right-handed alpha
Helix 6
AA6
A
76 80Right-handed 310
Helix 7
AA7
A
81 94Right-handed alpha
Helix 8
AA8
A
108 112Right-handed 310
Helix 9
AA9
A
123 130Right-handed alpha
Helix 10
AB1
A
131 138Right-handed alpha
Helix 11
AB2
A
139 142Right-handed 310
Helix 12
AB3
A
143 158Right-handed alpha
Helix 13
AB4
A
243 247Right-handed 310
Helix 14
AB5
A
249 264Right-handed alpha
Helix 15
AB6
A
267 280Right-handed alpha
Helix 16
AB7
A
289 293Right-handed 310
Helix 17
AB8
A
301 305Right-handed 310
Helix 18
AB9
A
317 321Right-handed 310
Helix 19
AC1
A
339 346Right-handed alpha
Helix 20
AC2
A
386 395Right-handed alpha
Helix 21
AC3
A
395 408Right-handed alpha
Helix 22
AC4
A
410 426Right-handed alpha
Helix 23
AC5
A
430 434Right-handed 310
Helix 24
AC6
A
459 473Right-handed alpha
Helix 25
AC7
A
476 490Right-handed alpha
Helix 26
AC8
A
500 507Right-handed 310
Helix 27
AC9
A
509 516Right-handed 310
Helix 28
AD1
A
517 537Right-handed alpha
Helix 29
AD2
A
545 563Right-handed alpha
Helix 30
AD3
A
576 580Right-handed 310
Helix 31
AD4
A
581 586Right-handed alpha
Helix 32
AD5
A
587 589Right-handed 310
Helix 33
AD6
A
606 618Right-handed alpha
Helix 34
AD7
A
621 635Right-handed alpha
Helix 35
AD8
A
638 642Right-handed 310
Helix 36
AD9
A
656 664Right-handed alpha
Helix 37
AE1
A
695 703Right-handed alpha
Helix 38
AE2
A
703 715Right-handed alpha
Helix 39
AE3
A
717 735Right-handed alpha
Helix 40
AE4
B
17 22Right-handed alpha
Helix 41
AE5
B
28 32Right-handed 310
Helix 42
AE6
B
46 53Right-handed alpha
Helix 43
AE7
B
55 68Right-handed alpha
Helix 44
AE8
B
76 80Right-handed 310
Helix 45
AE9
B
81 94Right-handed alpha
Helix 46
AF1
B
108 112Right-handed 310
Helix 47
AF2
B
118 122Right-handed 310
Helix 48
AF3
B
123 130Right-handed alpha
Helix 49
AF4
B
131 138Right-handed alpha
Helix 50
AF5
B
139 142Right-handed 310
Helix 51
AF6
B
143 159Right-handed alpha
Helix 52
AF7
B
249 264Right-handed alpha
Helix 53
AF8
B
267 279Right-handed alpha
Helix 54
AF9
B
289 293Right-handed 310
Helix 55
AG1
B
296 300Right-handed 310
Helix 56
AG2
B
301 305Right-handed 310
Helix 57
AG3
B
317 321Right-handed 310
Helix 58
AG4
B
339 348Right-handed alpha
Helix 59
AG5
B
386 395Right-handed alpha
Helix 60
AG6
B
395 408Right-handed alpha
Helix 61
AG7
B
408 426Right-handed alpha
Helix 62
AG8
B
430 434Right-handed 310
Helix 63
AG9
B
459 472Right-handed alpha
Helix 64
AH1
B
476 490Right-handed alpha
Helix 65
AH2
B
500 504Right-handed 310
Helix 66
AH3
B
513 516Right-handed 310
Helix 67
AH4
B
517 539Right-handed alpha
Helix 68
AH5
B
545 563Right-handed alpha
Helix 69
AH6
B
576 580Right-handed 310
Helix 70
AH7
B
581 587Right-handed alpha
Helix 71
AH8
B
606 618Right-handed alpha
Helix 72
AH9
B
621 635Right-handed alpha
Helix 73
AI1
B
638 642Right-handed 310
Helix 74
AI2
B
656 664Right-handed alpha
Helix 75
AI3
B
695 703Right-handed alpha
Helix 76
AI4
B
703 715Right-handed alpha
Helix 77
AI5
B
718 735Right-handed alpha
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There are 8 sheets in PDB entry 5WHQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 168first strand
Strand 2
A
435 438anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
350 354first strand
Strand 2
A
360 364anti-parallel
Strand 3
A
384 385anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
371 372first strand
Strand 2
A
380 381anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
667 671first strand
Strand 2
A
678 683anti-parallel
Strand 3
A
689 694anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
195 196first strand
Strand 2
B
224 225anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
350 354first strand
Strand 2
B
360 364anti-parallel
Strand 3
B
384 385anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
371 372first strand
Strand 2
B
380 381anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
667 671first strand
Strand 2
B
678 683anti-parallel
Strand 3
B
689 694anti-parallel
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