Analysis of interatomic Contacts of Structural Units in PDB entry:
5WHV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5WHV entry

There are 10 chains in PDB entry 5WHV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 22	LEU 139
B	ASN 22	LEU 139
C	ASN 22	LEU 139
D	ASN 22	LEU 139
E	ASN 22	LEU 139
F	ASN 22	PRO 140
G	ASN 22	PRO 140
H	ASN 22	HIS 146
I	ASN 22	LEU 139
J	ASN 22	HIS 149

There are 23 helices in PDB entry 5WHV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	81	96	Right-handed alpha
Helix 2	AA2	A	110	117	Right-handed alpha
Helix 3	AA3	B	81	96	Right-handed alpha
Helix 4	AA4	B	110	117	Right-handed alpha
Helix 5	AA5	C	81	96	Right-handed alpha
Helix 6	AA6	C	110	117	Right-handed alpha
Helix 7	AA7	D	81	96	Right-handed alpha
Helix 8	AA8	D	110	117	Right-handed alpha
Helix 9	AA9	E	81	96	Right-handed alpha
Helix 10	AB1	E	110	117	Right-handed alpha
Helix 11	AB2	F	81	96	Right-handed alpha
Helix 12	AB3	F	110	117	Right-handed alpha
Helix 13	AB4	G	81	96	Right-handed alpha
Helix 14	AB5	G	110	117	Right-handed alpha
Helix 15	AB6	H	23	27	Right-handed 310
Helix 16	AB7	H	81	96	Right-handed alpha
Helix 17	AB8	H	110	117	Right-handed alpha
Helix 18	AB9	H	138	144	Right-handed alpha
Helix 19	AC1	I	81	96	Right-handed alpha
Helix 20	AC2	I	110	117	Right-handed alpha
Helix 21	AC3	J	81	96	Right-handed alpha
Helix 22	AC4	J	110	117	Right-handed alpha
Helix 23	AC5	J	141	147	Right-handed alpha

There are 10 sheets in PDB entry 5WHV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 18 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	45	first strand
Strand 2	A	48	58	anti-parallel
Strand 3	A	68	72	anti-parallel
Strand 4	A	121	127	parallel
Strand 5	D	48	58	first strand
Strand 6	D	121	130	first strand
Strand 7	D	133	134	anti-parallel
Strand 8	E	29	45	first strand
Strand 9	E	99	104	anti-parallel
Strand 10	E	121	130	anti-parallel
Strand 11	B	48	58	first strand
Strand 12	B	121	130	first strand
Strand 13	B	133	134	anti-parallel
Strand 14	C	29	45	first strand
Strand 15	C	48	58	anti-parallel
Strand 16	C	68	72	anti-parallel
Strand 17	C	121	127	parallel
Strand 18	C	99	104	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	133	134	first strand
Strand 2	E	121	130	anti-parallel
Strand 3	E	68	72	parallel
Strand 4	E	48	58	anti-parallel
Strand 5	E	29	45	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	133	134	first strand
Strand 2	D	99	104	first strand
Strand 3	D	68	72	first strand
Strand 4	D	48	58	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	45	first strand
Strand 2	A	121	127	first strand
Strand 3	A	99	104	anti-parallel
Strand 4	A	29	45	anti-parallel
Strand 5	C	121	127	anti-parallel
Strand 6	D	29	45	first strand

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	58	first strand
Strand 2	B	68	72	anti-parallel
Strand 3	B	99	104	first strand
Strand 4	B	133	134	first strand
Strand 5	B	121	130	anti-parallel

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There are 18 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	29	45	first strand
Strand 2	F	48	58	anti-parallel
Strand 3	F	68	72	anti-parallel
Strand 4	F	121	130	parallel
Strand 5	I	29	45	anti-parallel
Strand 6	I	99	104	anti-parallel
Strand 7	I	121	127	anti-parallel
Strand 8	J	29	45	anti-parallel
Strand 9	J	99	104	anti-parallel
Strand 10	J	121	130	anti-parallel
Strand 11	G	29	45	anti-parallel
Strand 12	G	99	104	anti-parallel
Strand 13	G	121	127	anti-parallel
Strand 14	H	29	45	anti-parallel
Strand 15	H	48	58	anti-parallel
Strand 16	H	68	72	anti-parallel
Strand 17	H	121	130	parallel
Strand 18	H	99	104	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	133	134	first strand
Strand 2	J	121	130	anti-parallel
Strand 3	J	68	72	parallel
Strand 4	J	48	58	anti-parallel
Strand 5	J	29	45	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	121	127	first strand
Strand 2	I	68	72	parallel
Strand 3	I	48	58	anti-parallel
Strand 4	I	29	45	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	133	134	first strand
Strand 2	F	121	130	anti-parallel
Strand 3	F	99	104	anti-parallel
Strand 4	F	29	45	anti-parallel
Strand 5	H	121	130	anti-parallel
Strand 6	H	133	134	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	29	45	first strand
Strand 2	G	48	58	anti-parallel
Strand 3	G	68	72	anti-parallel
Strand 4	G	121	127	parallel
Strand 5	G	99	104	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5WHV

Analysis of interatomic Contacts of Structural Units in PDB entry:
5WHV