Analysis of interatomic Contacts of Structural Units in PDB entry:
5WHY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WHY entry

There are 2 chains in PDB entry 5WHY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 448
B
 MET 1GLN 448
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 5WHY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 34Right-handed alpha
Helix 2
AA2
A
35 40Right-handed 310
Helix 3
AA3
A
41 49Right-handed alpha
Helix 4
AA4
A
54 72Right-handed alpha
Helix 5
AA5
A
126 141Right-handed alpha
Helix 6
AA6
A
155 158Right-handed 310
Helix 7
AA7
A
159 178Right-handed alpha
Helix 8
AA8
A
193 202Right-handed alpha
Helix 9
AA9
A
214 219Right-handed alpha
Helix 10
AB1
A
230 245Right-handed alpha
Helix 11
AB2
A
257 261Right-handed 310
Helix 12
AB3
A
262 273Right-handed alpha
Helix 13
AB4
A
294 296Right-handed 310
Helix 14
AB5
A
297 315Right-handed alpha
Helix 15
AB6
A
326 328Right-handed 310
Helix 16
AB7
A
362 366Right-handed 310
Helix 17
AB8
A
382 391Right-handed alpha
Helix 18
AB9
A
397 402Right-handed alpha
Helix 19
AC1
A
413 422Right-handed alpha
Helix 20
AC2
A
428 448Right-handed alpha
Helix 21
AC3
B
27 38Right-handed alpha
Helix 22
AC4
B
41 49Right-handed alpha
Helix 23
AC5
B
54 71Right-handed alpha
Helix 24
AC6
B
126 142Right-handed alpha
Helix 25
AC7
B
155 158Right-handed 310
Helix 26
AC8
B
159 177Right-handed alpha
Helix 27
AC9
B
193 204Right-handed alpha
Helix 28
AD1
B
214 222Right-handed alpha
Helix 29
AD2
B
230 245Right-handed alpha
Helix 30
AD3
B
257 261Right-handed 310
Helix 31
AD4
B
263 274Right-handed alpha
Helix 32
AD5
B
294 296Right-handed 310
Helix 33
AD6
B
297 319Right-handed alpha
Helix 34
AD7
B
326 328Right-handed 310
Helix 35
AD8
B
362 366Right-handed 310
Helix 36
AD9
B
368 372Right-handed 310
Helix 37
AE1
B
382 391Right-handed alpha
Helix 38
AE2
B
413 420Right-handed alpha
Helix 39
AE3
B
428 447Right-handed alpha
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There are 4 sheets in PDB entry 5WHY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 8first strand
Strand 2
A
13 17anti-parallel
Strand 3
A
23 26anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 324first strand
Strand 2
A
277 282parallel
Strand 3
A
250 256parallel
Strand 4
A
206 210parallel
Strand 5
A
180 187parallel
Strand 6
A
146 153parallel
Strand 7
A
95 101parallel
Strand 8
A
350 353parallel
Strand 9
A
358 360anti-parallel
Strand 10
A
374 375anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 9first strand
Strand 2
B
12 17anti-parallel
Strand 3
B
22 26anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
323 324first strand
Strand 2
B
277 282parallel
Strand 3
B
250 256parallel
Strand 4
B
206 210parallel
Strand 5
B
180 187parallel
Strand 6
B
146 153parallel
Strand 7
B
95 101parallel
Strand 8
B
350 353parallel
Strand 9
B
359 360anti-parallel
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