Analysis of interatomic Contacts of Structural Units in PDB entry:
5WI9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5WI9 entry

There are 6 chains in PDB entry 5WI9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 78	PHE 508
B	TYR 78	PHE 508
L	GLU 1	LYS 208
H	VAL 2	LYS 225
E	GLU 1	ARG 212
F	VAL 2	LYS 225

There are 55 helices in PDB entry 5WI9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	92	97	Right-handed alpha
Helix 2	AA2	A	101	105	Right-handed 310
Helix 3	AA3	A	108	118	Right-handed alpha
Helix 4	AA4	A	133	145	Right-handed alpha
Helix 5	AA5	A	154	159	Right-handed alpha
Helix 6	AA6	A	168	185	Right-handed alpha
Helix 7	AA7	A	199	207	Right-handed alpha
Helix 8	AA8	A	208	211	Right-handed 310
Helix 9	AA9	A	212	230	Right-handed alpha
Helix 10	AB1	A	241	251	Right-handed alpha
Helix 11	AB2	A	262	288	Right-handed alpha
Helix 12	AB3	A	288	293	Right-handed alpha
Helix 13	AB4	A	312	336	Right-handed alpha
Helix 14	AB5	A	341	348	Right-handed alpha
Helix 15	AB6	A	356	364	Right-handed alpha
Helix 16	AB7	A	375	379	Right-handed 310
Helix 17	AB8	A	395	407	Right-handed alpha
Helix 18	AB9	A	429	449	Right-handed alpha
Helix 19	AC1	A	467	471	Right-handed 310
Helix 20	AC2	A	493	506	Right-handed alpha
Helix 21	AC3	B	92	97	Right-handed alpha
Helix 22	AC4	B	101	105	Right-handed 310
Helix 23	AC5	B	108	118	Right-handed alpha
Helix 24	AC6	B	133	145	Right-handed alpha
Helix 25	AC7	B	154	159	Right-handed alpha
Helix 26	AC8	B	168	185	Right-handed alpha
Helix 27	AC9	B	199	207	Right-handed alpha
Helix 28	AD1	B	208	211	Right-handed 310
Helix 29	AD2	B	212	230	Right-handed alpha
Helix 30	AD3	B	241	251	Right-handed alpha
Helix 31	AD4	B	262	288	Right-handed alpha
Helix 32	AD5	B	288	293	Right-handed alpha
Helix 33	AD6	B	312	327	Right-handed alpha
Helix 34	AD7	B	327	336	Right-handed alpha
Helix 35	AD8	B	341	348	Right-handed alpha
Helix 36	AD9	B	356	364	Right-handed alpha
Helix 37	AE1	B	375	379	Right-handed 310
Helix 38	AE2	B	381	385	Right-handed 310
Helix 39	AE3	B	395	407	Right-handed alpha
Helix 40	AE4	B	429	449	Right-handed alpha
Helix 41	AE5	B	467	471	Right-handed 310
Helix 42	AE6	B	493	506	Right-handed alpha
Helix 43	AE7	L	30	32	Right-handed 310
Helix 44	AE8	L	80	84	Right-handed 310
Helix 45	AE9	L	122	129	Right-handed alpha
Helix 46	AF1	H	28	32	Right-handed 310
Helix 47	AF2	H	87	91	Right-handed 310
Helix 48	AF3	H	167	169	Right-handed 310
Helix 49	AF4	H	212	215	Right-handed 310
Helix 50	AF5	E	30	32	Right-handed 310
Helix 51	AF6	E	80	84	Right-handed 310
Helix 52	AF7	E	122	128	Right-handed alpha
Helix 53	AF8	E	184	188	Right-handed alpha
Helix 54	AF9	F	28	32	Right-handed 310
Helix 55	AG1	F	167	169	Right-handed 310

There are 29 sheets in PDB entry 5WI9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	90	first strand
Strand 2	A	148	152	parallel
Strand 3	A	188	194	parallel
Strand 4	A	235	240	parallel
Strand 5	A	295	301	parallel
Strand 6	A	370	374	parallel
Strand 7	A	412	417	parallel
Strand 8	A	454	460	parallel
Strand 9	A	86	90	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	306	first strand
Strand 2	A	391	393	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	421	422	first strand
Strand 2	A	474	475	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	479	480	first strand
Strand 2	A	491	492	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	90	first strand
Strand 2	B	148	152	parallel
Strand 3	B	188	194	parallel
Strand 4	B	235	240	parallel
Strand 5	B	295	301	parallel
Strand 6	B	370	374	parallel
Strand 7	B	412	417	parallel
Strand 8	B	454	460	parallel
Strand 9	B	86	90	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	306	first strand
Strand 2	B	391	393	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	421	422	first strand
Strand 2	B	474	475	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	479	480	first strand
Strand 2	B	491	492	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	71	76	anti-parallel
Strand 4	L	63	68	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	103	107	parallel
Strand 3	L	86	91	anti-parallel
Strand 4	L	34	39	anti-parallel
Strand 5	L	46	50	anti-parallel
Strand 6	L	54	55	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	103	107	parallel
Strand 3	L	86	91	anti-parallel
Strand 4	L	98	99	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	115	119	first strand
Strand 2	L	131	140	anti-parallel
Strand 3	L	174	182	anti-parallel
Strand 4	L	160	161	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	118	122	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	118	122	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	111	114	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	131	135	first strand
Strand 2	H	146	156	anti-parallel
Strand 3	H	187	196	anti-parallel
Strand 4	H	175	176	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	131	135	first strand
Strand 2	H	146	156	anti-parallel
Strand 3	H	187	196	anti-parallel
Strand 4	H	180	181	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	162	165	first strand
Strand 2	H	206	211	anti-parallel
Strand 3	H	216	221	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	7	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	71	76	anti-parallel
Strand 4	E	63	68	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	103	107	parallel
Strand 3	E	86	91	anti-parallel
Strand 4	E	34	39	anti-parallel
Strand 5	E	46	50	anti-parallel
Strand 6	E	54	55	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	103	107	parallel
Strand 3	E	86	91	anti-parallel
Strand 4	E	98	99	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	115	119	first strand
Strand 2	E	130	140	anti-parallel
Strand 3	E	174	183	anti-parallel
Strand 4	E	160	164	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	154	155	first strand
Strand 2	E	146	151	anti-parallel
Strand 3	E	192	198	anti-parallel
Strand 4	E	206	211	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	18	25	anti-parallel
Strand 3	F	78	83	anti-parallel
Strand 4	F	69	73	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	118	122	parallel
Strand 3	F	92	99	anti-parallel
Strand 4	F	33	39	anti-parallel
Strand 5	F	45	51	anti-parallel
Strand 6	F	58	60	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	118	122	parallel
Strand 3	F	92	99	anti-parallel
Strand 4	F	111	114	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	131	135	first strand
Strand 2	F	146	156	anti-parallel
Strand 3	F	187	196	anti-parallel
Strand 4	F	175	176	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	131	135	first strand
Strand 2	F	146	156	anti-parallel
Strand 3	F	187	196	anti-parallel
Strand 4	F	180	181	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	162	165	first strand
Strand 2	F	206	211	anti-parallel
Strand 3	F	216	221	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5WI9

Analysis of interatomic Contacts of Structural Units in PDB entry:
5WI9