Analysis of interatomic Contacts of Structural Units in PDB entry:
5WII


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WII entry

There are 4 chains in PDB entry 5WII (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 90GLU 230
B
 THR 88GLU 230
C
 GLN 91GLU 230
D
 GLN 91GLU 230
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5WII. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
95 112Right-handed alpha
Helix 2
AA2
A
117 128Right-handed alpha
Helix 3
AA3
A
130 139Right-handed alpha
Helix 4
AA4
A
140 142Right-handed 310
Helix 5
AA5
A
146 151Right-handed alpha
Helix 6
AA6
A
168 170Right-handed 310
Helix 7
AA7
B
95 112Right-handed alpha
Helix 8
AA8
B
117 128Right-handed alpha
Helix 9
AA9
B
130 139Right-handed alpha
Helix 10
AB1
B
140 142Right-handed 310
Helix 11
AB2
B
146 152Right-handed alpha
Helix 12
AB3
B
209 214Right-handed alpha
Helix 13
AB4
C
95 112Right-handed alpha
Helix 14
AB5
C
117 128Right-handed alpha
Helix 15
AB6
C
130 139Right-handed alpha
Helix 16
AB7
C
146 152Right-handed alpha
Helix 17
AB8
C
168 170Right-handed 310
Helix 18
AB9
C
209 216Right-handed alpha
Helix 19
AC1
D
95 112Right-handed alpha
Helix 20
AC2
D
117 128Right-handed alpha
Helix 21
AC3
D
130 139Right-handed alpha
Helix 22
AC4
D
146 152Right-handed alpha
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There are 5 sheets in PDB entry 5WII. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 167first strand
Strand 2
A
172 183anti-parallel
Strand 3
A
193 203anti-parallel
Strand 4
A
220 228anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
155 167first strand
Strand 2
B
172 183anti-parallel
Strand 3
B
192 203anti-parallel
Strand 4
B
220 228anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
155 167first strand
Strand 2
C
172 183anti-parallel
Strand 3
C
193 202anti-parallel
Strand 4
C
221 229anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
155 167first strand
Strand 2
D
172 183anti-parallel
Strand 3
D
193 203anti-parallel
Strand 4
D
220 224anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
155 167first strand
Strand 2
D
172 183anti-parallel
Strand 3
D
193 203anti-parallel
Strand 4
D
227 229anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il