Analysis of interatomic Contacts of Structural Units in PDB entry:
5WIP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WIP entry

There are 4 chains in PDB entry 5WIP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 88GLU 230
B
 THR 88GLU 230
C
 THR 92GLU 230
D
 THR 92GLU 230
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 5WIP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
95 112Right-handed alpha
Helix 2
AA2
A
117 128Right-handed alpha
Helix 3
AA3
A
130 139Right-handed alpha
Helix 4
AA4
A
140 142Right-handed 310
Helix 5
AA5
A
146 152Right-handed alpha
Helix 6
AA6
A
168 170Right-handed 310
Helix 7
AA7
A
209 214Right-handed alpha
Helix 8
AA8
B
95 112Right-handed alpha
Helix 9
AA9
B
117 128Right-handed alpha
Helix 10
AB1
B
130 139Right-handed alpha
Helix 11
AB2
B
140 142Right-handed 310
Helix 12
AB3
B
146 152Right-handed alpha
Helix 13
AB4
B
168 170Right-handed 310
Helix 14
AB5
B
209 216Right-handed alpha
Helix 15
AB6
C
95 111Right-handed alpha
Helix 16
AB7
C
117 129Right-handed alpha
Helix 17
AB8
C
130 139Right-handed alpha
Helix 18
AB9
C
146 152Right-handed alpha
Helix 19
AC1
C
168 170Right-handed 310
Helix 20
AC2
C
211 215Right-handed 310
Helix 21
AC3
D
95 112Right-handed alpha
Helix 22
AC4
D
114 116Right-handed 310
Helix 23
AC5
D
117 128Right-handed alpha
Helix 24
AC6
D
130 139Right-handed alpha
Helix 25
AC7
D
140 145Right-handed 310
Helix 26
AC8
D
146 152Right-handed alpha
Helix 27
AC9
D
210 215Right-handed 310
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There are 5 sheets in PDB entry 5WIP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 167first strand
Strand 2
A
172 183anti-parallel
Strand 3
A
193 203anti-parallel
Strand 4
A
220 229anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
155 167first strand
Strand 2
B
172 183anti-parallel
Strand 3
B
193 203anti-parallel
Strand 4
B
220 229anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
155 167first strand
Strand 2
C
172 183anti-parallel
Strand 3
C
193 203anti-parallel
Strand 4
C
220 224anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
155 167first strand
Strand 2
C
172 183anti-parallel
Strand 3
C
193 203anti-parallel
Strand 4
C
227 229anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
155 167first strand
Strand 2
D
172 183anti-parallel
Strand 3
D
193 203anti-parallel
Strand 4
D
220 229anti-parallel
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