Analysis of interatomic Contacts of Structural Units in PDB entry:
5WJ8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WJ8 entry

There are 2 chains in PDB entry 5WJ8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1287ASP 1408
A
 PRO 1410ASP 1496
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 5WJ8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1332 1338Right-handed alpha
Helix 2
AA2
A
1425 1429Right-handed 310
Helix 3
AA3
A
1439 1442Right-handed 310
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There are 5 sheets in PDB entry 5WJ8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1289 1290first strand
Strand 2
A
1314 1315anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1295 1300first strand
Strand 2
A
1377 1386parallel
Strand 3
A
1361 1369anti-parallel
Strand 4
A
1324 1327anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1308 1311first strand
Strand 2
A
1347 1350anti-parallel
Strand 3
A
1339 1341anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1394 1395first strand
Strand 2
A
1414 1421anti-parallel
Strand 3
A
1453 1458anti-parallel
Strand 4
A
1444 1449anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1402 1406first strand
Strand 2
A
1485 1495parallel
Strand 3
A
1469 1478anti-parallel
Strand 4
A
1431 1437anti-parallel
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