Analysis of interatomic Contacts of Structural Units in PDB entry:
5WJO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5WJO entry

There are 4 chains in PDB entry 5WJO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 3	PRO 199
B	ALA 2	ASP 249
C	LYS 3	PRO 201
D	GLY 3	ASP 249

There are 14 helices in PDB entry 5WJO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	79	83	Right-handed 310
Helix 2	AA2	A	163	166	Right-handed 310
Helix 3	AA3	A	182	186	Right-handed 310
Helix 4	AA4	B	83	87	Right-handed 310
Helix 5	AA5	B	121	125	Right-handed 310
Helix 6	AA6	B	136	144	Right-handed alpha
Helix 7	AA7	B	203	207	Right-handed alpha
Helix 8	AA8	C	79	83	Right-handed 310
Helix 9	AA9	C	163	166	Right-handed 310
Helix 10	AB1	C	182	187	Right-handed alpha
Helix 11	AB2	D	83	87	Right-handed 310
Helix 12	AB3	D	121	125	Right-handed 310
Helix 13	AB4	D	136	144	Right-handed alpha
Helix 14	AB5	D	203	207	Right-handed alpha

There are 20 sheets in PDB entry 5WJO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	13	first strand
Strand 2	A	104	109	parallel
Strand 3	A	84	91	anti-parallel
Strand 4	A	32	38	anti-parallel
Strand 5	A	45	50	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	23	first strand
Strand 2	A	70	75	anti-parallel
Strand 3	A	61	64	anti-parallel
Strand 4	A	55	56	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	123	first strand
Strand 2	A	131	136	anti-parallel
Strand 3	A	167	175	anti-parallel
Strand 4	A	153	154	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	123	first strand
Strand 2	A	131	136	anti-parallel
Strand 3	A	167	175	anti-parallel
Strand 4	A	158	162	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	7	first strand
Strand 2	B	19	24	anti-parallel
Strand 3	B	75	79	anti-parallel
Strand 4	B	65	68	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	14	first strand
Strand 2	B	114	119	parallel
Strand 3	B	88	95	anti-parallel
Strand 4	B	31	37	anti-parallel
Strand 5	B	44	50	anti-parallel
Strand 6	B	53	56	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	14	first strand
Strand 2	B	114	119	parallel
Strand 3	B	88	95	anti-parallel
Strand 4	B	109	110	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	133	first strand
Strand 2	B	145	155	anti-parallel
Strand 3	B	193	202	anti-parallel
Strand 4	B	175	177	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	133	first strand
Strand 2	B	145	155	anti-parallel
Strand 3	B	193	202	anti-parallel
Strand 4	B	182	183	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	171	first strand
Strand 2	B	160	166	anti-parallel
Strand 3	B	212	219	anti-parallel
Strand 4	B	238	245	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	13	first strand
Strand 2	C	104	109	parallel
Strand 3	C	84	92	anti-parallel
Strand 4	C	31	38	anti-parallel
Strand 5	C	45	50	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	23	first strand
Strand 2	C	70	75	anti-parallel
Strand 3	C	61	64	anti-parallel
Strand 4	C	55	56	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	123	first strand
Strand 2	C	131	136	anti-parallel
Strand 3	C	167	175	anti-parallel
Strand 4	C	153	154	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	123	first strand
Strand 2	C	131	136	anti-parallel
Strand 3	C	167	175	anti-parallel
Strand 4	C	158	162	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	7	first strand
Strand 2	D	19	24	anti-parallel
Strand 3	D	75	79	anti-parallel
Strand 4	D	65	68	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	14	first strand
Strand 2	D	114	119	parallel
Strand 3	D	88	95	anti-parallel
Strand 4	D	31	37	anti-parallel
Strand 5	D	44	50	anti-parallel
Strand 6	D	53	56	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	14	first strand
Strand 2	D	114	119	parallel
Strand 3	D	88	95	anti-parallel
Strand 4	D	109	110	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	133	first strand
Strand 2	D	145	155	anti-parallel
Strand 3	D	193	202	anti-parallel
Strand 4	D	175	177	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	133	first strand
Strand 2	D	145	155	anti-parallel
Strand 3	D	193	202	anti-parallel
Strand 4	D	182	183	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	171	first strand
Strand 2	D	160	166	anti-parallel
Strand 3	D	212	219	anti-parallel
Strand 4	D	238	245	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5WJO

Analysis of interatomic Contacts of Structural Units in PDB entry:
5WJO