Analysis of interatomic Contacts of Structural Units in PDB entry:
5WJP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WJP entry

There is 1 chain in PDB entry 5WJP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 13LEU 249
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5WJP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 23Right-handed alpha
Helix 2
AA2
A
48 62Right-handed alpha
Helix 3
AA3
A
71 73Right-handed 310
Helix 4
AA4
A
74 81Right-handed alpha
Helix 5
AA5
A
93 99Right-handed alpha
Helix 6
AA6
A
118 120Right-handed 310
Helix 7
AA7
A
126 130Right-handed 310
Helix 8
AA8
A
142 152Right-handed alpha
Helix 9
AA9
A
165 172Right-handed alpha
Helix 10
AB1
A
182 192Right-handed alpha
Helix 11
AB2
A
216 233Right-handed alpha
Helix 12
AB3
A
234 243Right-handed alpha
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There are 5 sheets in PDB entry 5WJP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 69first strand
Strand 2
A
24 29parallel
Strand 3
A
86 87parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 33first strand
Strand 2
A
37 39anti-parallel
Strand 3
A
46 47anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 91first strand
Strand 2
A
203 209anti-parallel
Strand 3
A
107 116anti-parallel
Strand 4
A
177 181anti-parallel
Strand 5
A
135 139parallel
Strand 6
A
156 160parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 91first strand
Strand 2
A
203 209anti-parallel
Strand 3
A
107 116anti-parallel
Strand 4
A
195 197anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 102first strand
Strand 2
A
211 213anti-parallel
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