Analysis of interatomic Contacts of Structural Units in PDB entry:
5WK3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5WK3 entry

There are 12 chains in PDB entry 5WK3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
P	ASP 1	ARG 217
Q	GLU 1	PRO 221
R	ASP 1	ARG 217
S	GLU 1	PRO 221
T	ASP 1	GLY 218
U	GLU 1	PRO 221
V	ILE 2	ARG 217
W	GLU 1	PRO 221
A	GLU 9	ARG 70
B	GLU 9	SER 71
C	THR 7	ARG 70
D	CYS 10	ARG 70

There are 48 helices in PDB entry 5WK3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	P	32	35	Right-handed 310
Helix 2	AA2	P	85	89	Right-handed 310
Helix 3	AA3	P	127	133	Right-handed alpha
Helix 4	AA4	P	189	194	Right-handed alpha
Helix 5	AA5	Q	28	32	Right-handed 310
Helix 6	AA6	Q	74	76	Right-handed 310
Helix 7	AA7	Q	87	91	Right-handed 310
Helix 8	AA8	Q	164	166	Right-handed 310
Helix 9	AA9	Q	195	197	Right-handed 310
Helix 10	AB1	Q	209	212	Right-handed 310
Helix 11	AB2	R	32	35	Right-handed 310
Helix 12	AB3	R	85	89	Right-handed 310
Helix 13	AB4	R	127	132	Right-handed alpha
Helix 14	AB5	R	189	194	Right-handed alpha
Helix 15	AB6	S	28	32	Right-handed 310
Helix 16	AB7	S	74	76	Right-handed 310
Helix 17	AB8	S	87	91	Right-handed 310
Helix 18	AB9	S	164	166	Right-handed 310
Helix 19	AC1	S	195	197	Right-handed 310
Helix 20	AC2	S	209	212	Right-handed 310
Helix 21	AC3	T	32	35	Right-handed 310
Helix 22	AC4	T	85	89	Right-handed 310
Helix 23	AC5	T	127	132	Right-handed alpha
Helix 24	AC6	T	189	194	Right-handed alpha
Helix 25	AC7	U	28	32	Right-handed 310
Helix 26	AC8	U	74	76	Right-handed 310
Helix 27	AC9	U	87	91	Right-handed 310
Helix 28	AD1	U	164	166	Right-handed 310
Helix 29	AD2	U	195	197	Right-handed 310
Helix 30	AD3	U	209	212	Right-handed 310
Helix 31	AD4	V	32	35	Right-handed 310
Helix 32	AD5	V	85	89	Right-handed 310
Helix 33	AD6	V	127	133	Right-handed alpha
Helix 34	AD7	V	189	194	Right-handed alpha
Helix 35	AD8	W	28	32	Right-handed 310
Helix 36	AD9	W	74	76	Right-handed 310
Helix 37	AE1	W	87	91	Right-handed 310
Helix 38	AE2	W	164	166	Right-handed 310
Helix 39	AE3	W	195	197	Right-handed 310
Helix 40	AE4	W	209	212	Right-handed 310
Helix 41	AE5	A	20	22	Right-handed 310
Helix 42	AE6	A	55	70	Right-handed alpha
Helix 43	AE7	B	20	22	Right-handed 310
Helix 44	AE8	B	55	69	Right-handed alpha
Helix 45	AE9	C	20	22	Right-handed 310
Helix 46	AF1	C	55	68	Right-handed alpha
Helix 47	AF2	D	20	22	Right-handed 310
Helix 48	AF3	D	55	70	Right-handed alpha

There are 48 sheets in PDB entry 5WK3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	4	7	first strand
Strand 2	P	19	25	anti-parallel
Strand 3	P	76	81	anti-parallel
Strand 4	P	68	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	10	13	first strand
Strand 2	P	108	112	parallel
Strand 3	P	90	96	anti-parallel
Strand 4	P	39	44	anti-parallel
Strand 5	P	51	55	anti-parallel
Strand 6	P	59	60	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	30	31	first strand
Strand 2	P	36	37	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	120	124	first strand
Strand 2	P	135	145	anti-parallel
Strand 3	P	179	188	anti-parallel
Strand 4	P	165	169	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	159	160	first strand
Strand 2	P	151	156	anti-parallel
Strand 3	P	197	203	anti-parallel
Strand 4	P	211	216	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	3	6	first strand
Strand 2	Q	18	25	anti-parallel
Strand 3	Q	78	83	anti-parallel
Strand 4	Q	69	73	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	10	12	first strand
Strand 2	Q	115	119	parallel
Strand 3	Q	92	99	anti-parallel
Strand 4	Q	34	39	anti-parallel
Strand 5	Q	45	51	anti-parallel
Strand 6	Q	58	60	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	10	12	first strand
Strand 2	Q	115	119	parallel
Strand 3	Q	92	99	anti-parallel
Strand 4	Q	108	111	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	128	132	first strand
Strand 2	Q	143	153	anti-parallel
Strand 3	Q	184	193	anti-parallel
Strand 4	Q	171	173	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	128	132	first strand
Strand 2	Q	143	153	anti-parallel
Strand 3	Q	184	193	anti-parallel
Strand 4	Q	177	178	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	159	162	first strand
Strand 2	Q	203	208	anti-parallel
Strand 3	Q	213	218	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	4	7	first strand
Strand 2	R	19	25	anti-parallel
Strand 3	R	76	81	anti-parallel
Strand 4	R	68	73	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	10	13	first strand
Strand 2	R	108	112	parallel
Strand 3	R	90	96	anti-parallel
Strand 4	R	39	44	anti-parallel
Strand 5	R	51	55	anti-parallel
Strand 6	R	59	60	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	30	31	first strand
Strand 2	R	36	37	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	120	124	first strand
Strand 2	R	135	145	anti-parallel
Strand 3	R	179	188	anti-parallel
Strand 4	R	165	169	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	159	160	first strand
Strand 2	R	151	156	anti-parallel
Strand 3	R	197	203	anti-parallel
Strand 4	R	211	216	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	3	6	first strand
Strand 2	S	18	25	anti-parallel
Strand 3	S	78	83	anti-parallel
Strand 4	S	69	73	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	10	12	first strand
Strand 2	S	115	119	parallel
Strand 3	S	92	99	anti-parallel
Strand 4	S	34	39	anti-parallel
Strand 5	S	45	51	anti-parallel
Strand 6	S	58	60	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	10	12	first strand
Strand 2	S	115	119	parallel
Strand 3	S	92	99	anti-parallel
Strand 4	S	108	111	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	128	132	first strand
Strand 2	S	143	153	anti-parallel
Strand 3	S	184	193	anti-parallel
Strand 4	S	171	173	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	128	132	first strand
Strand 2	S	143	153	anti-parallel
Strand 3	S	184	193	anti-parallel
Strand 4	S	177	178	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	159	162	first strand
Strand 2	S	203	208	anti-parallel
Strand 3	S	213	218	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	4	7	first strand
Strand 2	T	19	25	anti-parallel
Strand 3	T	76	81	anti-parallel
Strand 4	T	68	73	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	10	13	first strand
Strand 2	T	108	112	parallel
Strand 3	T	90	96	anti-parallel
Strand 4	T	39	44	anti-parallel
Strand 5	T	51	55	anti-parallel
Strand 6	T	59	60	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	30	31	first strand
Strand 2	T	36	37	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	120	124	first strand
Strand 2	T	135	145	anti-parallel
Strand 3	T	179	188	anti-parallel
Strand 4	T	165	169	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	159	160	first strand
Strand 2	T	151	156	anti-parallel
Strand 3	T	197	203	anti-parallel
Strand 4	T	211	216	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	3	6	first strand
Strand 2	U	18	25	anti-parallel
Strand 3	U	78	83	anti-parallel
Strand 4	U	69	73	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	10	12	first strand
Strand 2	U	115	119	parallel
Strand 3	U	92	99	anti-parallel
Strand 4	U	34	39	anti-parallel
Strand 5	U	45	51	anti-parallel
Strand 6	U	58	60	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	10	12	first strand
Strand 2	U	115	119	parallel
Strand 3	U	92	99	anti-parallel
Strand 4	U	108	111	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	128	132	first strand
Strand 2	U	143	153	anti-parallel
Strand 3	U	184	193	anti-parallel
Strand 4	U	171	173	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	128	132	first strand
Strand 2	U	143	153	anti-parallel
Strand 3	U	184	193	anti-parallel
Strand 4	U	177	178	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	159	162	first strand
Strand 2	U	203	208	anti-parallel
Strand 3	U	213	218	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	4	7	first strand
Strand 2	V	19	25	anti-parallel
Strand 3	V	76	81	anti-parallel
Strand 4	V	68	73	anti-parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	10	13	first strand
Strand 2	V	108	112	parallel
Strand 3	V	90	96	anti-parallel
Strand 4	V	39	44	anti-parallel
Strand 5	V	51	55	anti-parallel
Strand 6	V	59	60	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	30	31	first strand
Strand 2	V	36	37	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	120	124	first strand
Strand 2	V	135	145	anti-parallel
Strand 3	V	179	188	anti-parallel
Strand 4	V	165	169	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	159	160	first strand
Strand 2	V	151	156	anti-parallel
Strand 3	V	197	203	anti-parallel
Strand 4	V	211	216	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	3	6	first strand
Strand 2	W	18	25	anti-parallel
Strand 3	W	78	83	anti-parallel
Strand 4	W	69	73	anti-parallel

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There are 6 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	10	12	first strand
Strand 2	W	115	119	parallel
Strand 3	W	92	99	anti-parallel
Strand 4	W	34	39	anti-parallel
Strand 5	W	45	51	anti-parallel
Strand 6	W	58	60	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	10	12	first strand
Strand 2	W	115	119	parallel
Strand 3	W	92	99	anti-parallel
Strand 4	W	108	111	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	128	132	first strand
Strand 2	W	143	153	anti-parallel
Strand 3	W	184	193	anti-parallel
Strand 4	W	171	173	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	128	132	first strand
Strand 2	W	143	153	anti-parallel
Strand 3	W	184	193	anti-parallel
Strand 4	W	177	178	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	159	162	first strand
Strand 2	W	202	208	anti-parallel
Strand 3	W	213	219	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	29	first strand
Strand 2	A	39	43	anti-parallel
Strand 3	A	48	51	anti-parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	24	29	first strand
Strand 2	B	39	43	anti-parallel
Strand 3	B	48	51	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	24	29	first strand
Strand 2	C	39	43	anti-parallel
Strand 3	C	48	51	anti-parallel

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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	24	29	first strand
Strand 2	D	39	43	anti-parallel
Strand 3	D	48	51	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5WK3

Analysis of interatomic Contacts of Structural Units in PDB entry:
5WK3