Analysis of interatomic Contacts of Structural Units in PDB entry:
5WK4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WK4 entry

There are 6 chains in PDB entry 5WK4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 GLY 20CYS 211
A
 CYS 22CYS 211
B
 GLY 20CYS 211
C
 GLY 20CYS 211
E
 CYS 22PRO 212
F
 CYS 22PRO 212
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 40 helices in PDB entry 5WK4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
161 163Right-handed 310
Helix 2
AA2
D
164 174Right-handed alpha
Helix 3
AA3
D
175 178Right-handed 310
Helix 4
AA4
D
185 189Right-handed 310
Helix 5
AA5
D
197 201Right-handed 310
Helix 6
AA6
D
202 206Right-handed 310
Helix 7
AA7
D
207 211Right-handed 310
Helix 8
AA8
A
161 163Right-handed 310
Helix 9
AA9
A
164 174Right-handed alpha
Helix 10
AB1
A
175 178Right-handed 310
Helix 11
AB2
A
185 189Right-handed 310
Helix 12
AB3
A
197 201Right-handed 310
Helix 13
AB4
A
202 206Right-handed 310
Helix 14
AB5
B
161 163Right-handed 310
Helix 15
AB6
B
164 174Right-handed alpha
Helix 16
AB7
B
175 178Right-handed 310
Helix 17
AB8
B
185 189Right-handed 310
Helix 18
AB9
B
197 201Right-handed 310
Helix 19
AC1
B
202 206Right-handed 310
Helix 20
AC2
B
207 211Right-handed 310
Helix 21
AC3
C
161 163Right-handed 310
Helix 22
AC4
C
164 174Right-handed alpha
Helix 23
AC5
C
175 178Right-handed 310
Helix 24
AC6
C
185 189Right-handed 310
Helix 25
AC7
C
197 201Right-handed 310
Helix 26
AC8
C
207 211Right-handed 310
Helix 27
AC9
E
161 163Right-handed 310
Helix 28
AD1
E
164 174Right-handed alpha
Helix 29
AD2
E
175 178Right-handed 310
Helix 30
AD3
E
185 189Right-handed 310
Helix 31
AD4
E
197 201Right-handed 310
Helix 32
AD5
E
202 206Right-handed 310
Helix 33
AD6
E
207 211Right-handed 310
Helix 34
AD7
F
161 163Right-handed 310
Helix 35
AD8
F
164 174Right-handed alpha
Helix 36
AD9
F
175 178Right-handed 310
Helix 37
AE1
F
185 189Right-handed 310
Helix 38
AE2
F
197 201Right-handed 310
Helix 39
AE3
F
202 206Right-handed 310
Helix 40
AE4
F
207 211Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 5WK4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
27 29first strand
Strand 2
D
32 34anti-parallel
Strand 3
D
53 55parallel
Strand 4
D
77 79parallel
Strand 5
D
101 103parallel
Strand 6
D
125 127parallel
Strand 7
D
149 151parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 29first strand
Strand 2
A
32 34anti-parallel
Strand 3
A
53 55parallel
Strand 4
A
77 79parallel
Strand 5
A
101 103parallel
Strand 6
A
125 127parallel
Strand 7
A
149 151parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 29first strand
Strand 2
B
32 34anti-parallel
Strand 3
B
53 55parallel
Strand 4
B
77 79parallel
Strand 5
B
101 103parallel
Strand 6
B
125 127parallel
Strand 7
B
149 151parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
27 29first strand
Strand 2
C
32 34anti-parallel
Strand 3
C
53 55parallel
Strand 4
C
77 79parallel
Strand 5
C
101 103parallel
Strand 6
C
125 127parallel
Strand 7
C
149 151parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
27 29first strand
Strand 2
E
32 34anti-parallel
Strand 3
E
53 55parallel
Strand 4
E
77 79parallel
Strand 5
E
101 103parallel
Strand 6
E
125 127parallel
Strand 7
E
149 151parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
27 29first strand
Strand 2
F
32 34anti-parallel
Strand 3
F
53 55parallel
Strand 4
F
77 79parallel
Strand 5
F
101 103parallel
Strand 6
F
125 127parallel
Strand 7
F
149 151parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il