Analysis of interatomic Contacts of Structural Units in PDB entry:
5WKC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5WKC entry

There are 3 chains in PDB entry 5WKC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 85	HIS 687
B	PRO 83	HIS 687
E	ASP 84	ASP 205

There are133 helices in PDB entry 5WKC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	93	105	Right-handed alpha
Helix 2	AA2	A	115	117	Right-handed 310
Helix 3	AA3	A	118	125	Right-handed alpha
Helix 4	AA4	A	138	154	Right-handed alpha
Helix 5	AA5	A	164	169	Right-handed alpha
Helix 6	AA6	A	170	181	Right-handed alpha
Helix 7	AA7	A	205	210	Right-handed alpha
Helix 8	AA8	A	211	214	Right-handed 310
Helix 9	AA9	A	222	224	Right-handed 310
Helix 10	AB1	A	225	239	Right-handed alpha
Helix 11	AB2	A	251	256	Right-handed alpha
Helix 12	AB3	A	263	267	Right-handed 310
Helix 13	AB4	A	281	299	Right-handed alpha
Helix 14	AB5	A	308	313	Right-handed 310
Helix 15	AB6	A	315	328	Right-handed alpha
Helix 16	AB7	A	335	338	Right-handed 310
Helix 17	AB8	A	357	367	Right-handed alpha
Helix 18	AB9	A	378	383	Right-handed alpha
Helix 19	AC1	A	389	398	Right-handed alpha
Helix 20	AC2	A	409	413	Right-handed 310
Helix 21	AC3	A	426	435	Right-handed alpha
Helix 22	AC4	A	436	438	Right-handed 310
Helix 23	AC5	A	444	458	Right-handed alpha
Helix 24	AC6	A	472	486	Right-handed alpha
Helix 25	AC7	A	498	508	Right-handed alpha
Helix 26	AC8	A	527	539	Right-handed alpha
Helix 27	AC9	A	550	557	Right-handed alpha
Helix 28	AD1	A	559	567	Right-handed alpha
Helix 29	AD2	A	580	591	Right-handed alpha
Helix 30	AD3	A	604	613	Right-handed alpha
Helix 31	AD4	A	621	623	Right-handed 310
Helix 32	AD5	A	624	635	Right-handed alpha
Helix 33	AD6	A	668	684	Right-handed alpha
Helix 34	AD7	B	93	105	Right-handed alpha
Helix 35	AD8	B	118	125	Right-handed alpha
Helix 36	AD9	B	138	154	Right-handed alpha
Helix 37	AE1	B	164	169	Right-handed alpha
Helix 38	AE2	B	170	181	Right-handed alpha
Helix 39	AE3	B	205	210	Right-handed alpha
Helix 40	AE4	B	211	214	Right-handed 310
Helix 41	AE5	B	222	224	Right-handed 310
Helix 42	AE6	B	225	239	Right-handed alpha
Helix 43	AE7	B	251	256	Right-handed alpha
Helix 44	AE8	B	265	267	Right-handed 310
Helix 45	AE9	B	278	299	Right-handed alpha
Helix 46	AF1	B	308	313	Right-handed 310
Helix 47	AF2	B	315	328	Right-handed alpha
Helix 48	AF3	B	335	338	Right-handed 310
Helix 49	AF4	B	357	367	Right-handed alpha
Helix 50	AF5	B	378	383	Right-handed alpha
Helix 51	AF6	B	389	398	Right-handed alpha
Helix 52	AF7	B	409	413	Right-handed 310
Helix 53	AF8	B	426	435	Right-handed alpha
Helix 54	AF9	B	436	438	Right-handed 310
Helix 55	AG1	B	444	458	Right-handed alpha
Helix 56	AG2	B	472	486	Right-handed alpha
Helix 57	AG3	B	498	508	Right-handed alpha
Helix 58	AG4	B	527	539	Right-handed alpha
Helix 59	AG5	B	550	557	Right-handed alpha
Helix 60	AG6	B	559	567	Right-handed alpha
Helix 61	AG7	B	580	591	Right-handed alpha
Helix 62	AG8	B	604	612	Right-handed alpha
Helix 63	AG9	B	621	623	Right-handed 310
Helix 64	AH1	B	624	635	Right-handed alpha
Helix 65	AH2	B	668	683	Right-handed alpha
Helix 66	AH3	E	93	105	Right-handed alpha
Helix 67	AH4	E	115	117	Right-handed 310
Helix 68	AH5	E	118	125	Right-handed alpha
Helix 69	AH6	E	138	154	Right-handed alpha
Helix 70	AH7	E	164	169	Right-handed alpha
Helix 71	AH8	E	170	181	Right-handed alpha
Helix 72	AH9	E	205	210	Right-handed alpha
Helix 73	AI1	E	211	214	Right-handed 310
Helix 74	AI2	E	222	224	Right-handed 310
Helix 75	AI3	E	225	238	Right-handed alpha
Helix 76	AI4	E	251	256	Right-handed alpha
Helix 77	AI5	E	263	268	Right-handed 310
Helix 78	AI6	E	283	297	Right-handed alpha
Helix 79	AI7	E	308	313	Right-handed 310
Helix 80	AI8	E	315	328	Right-handed alpha
Helix 81	AI9	E	335	338	Right-handed 310
Helix 82	AJ1	E	357	367	Right-handed alpha
Helix 83	AJ2	E	378	383	Right-handed alpha
Helix 84	AJ3	E	384	388	Right-handed 310
Helix 85	AJ4	E	389	398	Right-handed alpha
Helix 86	AJ5	E	409	413	Right-handed 310
Helix 87	AJ6	E	426	435	Right-handed alpha
Helix 88	AJ7	E	436	438	Right-handed 310
Helix 89	AJ8	E	444	458	Right-handed alpha
Helix 90	AJ9	E	472	486	Right-handed alpha
Helix 91	AK1	E	498	508	Right-handed alpha
Helix 92	AK2	E	527	539	Right-handed alpha
Helix 93	AK3	E	550	557	Right-handed alpha
Helix 94	AK4	E	559	567	Right-handed alpha
Helix 95	AK5	E	580	591	Right-handed alpha
Helix 96	AK6	E	604	613	Right-handed alpha
Helix 97	AK7	E	621	623	Right-handed 310
Helix 98	AK8	E	624	635	Right-handed alpha
Helix 99	AK9	E	668	683	Right-handed alpha
Helix 100	AL1	D	93	105	Right-handed alpha
Helix 101	AL2	D	118	125	Right-handed alpha
Helix 102	AL3	D	138	154	Right-handed alpha
Helix 103	AL4	D	164	169	Right-handed alpha
Helix 104	AL5	D	170	181	Right-handed alpha
Helix 105	AL6	D	192	196	Right-handed 310
Helix 106	AL7	D	205	210	Right-handed alpha
Helix 107	AL8	D	211	214	Right-handed 310
Helix 108	AL9	D	222	224	Right-handed 310
Helix 109	AM1	D	225	239	Right-handed alpha
Helix 110	AM2	D	251	256	Right-handed alpha
Helix 111	AM3	D	265	267	Right-handed 310
Helix 112	AM4	D	279	299	Right-handed alpha
Helix 113	AM5	D	308	313	Right-handed 310
Helix 114	AM6	D	315	328	Right-handed alpha
Helix 115	AM7	D	335	338	Right-handed 310
Helix 116	AM8	D	357	367	Right-handed alpha
Helix 117	AM9	D	378	383	Right-handed alpha
Helix 118	AN1	D	384	388	Right-handed 310
Helix 119	AN2	D	389	398	Right-handed alpha
Helix 120	AN3	D	409	413	Right-handed 310
Helix 121	AN4	D	426	435	Right-handed alpha
Helix 122	AN5	D	436	438	Right-handed 310
Helix 123	AN6	D	444	458	Right-handed alpha
Helix 124	AN7	D	472	486	Right-handed alpha
Helix 125	AN8	D	498	508	Right-handed alpha
Helix 126	AN9	D	527	539	Right-handed alpha
Helix 127	AO1	D	550	557	Right-handed alpha
Helix 128	AO2	D	559	567	Right-handed alpha
Helix 129	AO3	D	580	591	Right-handed alpha
Helix 130	AO4	D	604	612	Right-handed alpha
Helix 131	AO5	D	621	623	Right-handed 310
Helix 132	AO6	D	624	635	Right-handed alpha
Helix 133	AO7	D	668	683	Right-handed alpha

There are 14 sheets in PDB entry 5WKC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	134	first strand
Strand 2	A	109	113	parallel
Strand 3	A	157	161	parallel
Strand 4	A	184	190	parallel
Strand 5	A	244	250	parallel
Strand 6	A	216	219	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	351	first strand
Strand 2	A	331	333	parallel
Strand 3	A	302	306	parallel
Strand 4	A	369	373	parallel
Strand 5	A	402	407	parallel
Strand 6	A	421	424	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	516	517	first strand
Strand 2	A	491	495	parallel
Strand 3	A	543	549	parallel
Strand 4	A	571	576	parallel
Strand 5	A	639	644	parallel
Strand 6	A	615	619	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	86	first strand
Strand 2	B	262	263	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	134	first strand
Strand 2	B	109	113	parallel
Strand 3	B	157	161	parallel
Strand 4	B	184	190	parallel
Strand 5	B	244	250	parallel
Strand 6	B	216	219	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	351	first strand
Strand 2	B	331	333	parallel
Strand 3	B	302	306	parallel
Strand 4	B	369	373	parallel
Strand 5	B	402	407	parallel
Strand 6	B	421	424	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	516	517	first strand
Strand 2	B	491	495	parallel
Strand 3	B	543	549	parallel
Strand 4	B	571	576	parallel
Strand 5	B	639	644	parallel
Strand 6	B	615	619	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	132	134	first strand
Strand 2	E	109	112	parallel
Strand 3	E	157	161	parallel
Strand 4	E	184	190	parallel
Strand 5	E	244	250	parallel
Strand 6	E	216	219	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	348	351	first strand
Strand 2	E	331	333	parallel
Strand 3	E	302	306	parallel
Strand 4	E	369	373	parallel
Strand 5	E	402	407	parallel
Strand 6	E	421	424	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	516	517	first strand
Strand 2	E	491	495	parallel
Strand 3	E	543	549	parallel
Strand 4	E	571	576	parallel
Strand 5	E	639	644	parallel
Strand 6	E	615	619	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	85	86	first strand
Strand 2	D	262	263	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	132	134	first strand
Strand 2	D	109	112	parallel
Strand 3	D	157	161	parallel
Strand 4	D	184	190	parallel
Strand 5	D	244	250	parallel
Strand 6	D	216	219	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	348	351	first strand
Strand 2	D	331	333	parallel
Strand 3	D	302	306	parallel
Strand 4	D	369	373	parallel
Strand 5	D	402	407	parallel
Strand 6	D	421	424	parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	516	517	first strand
Strand 2	D	491	495	parallel
Strand 3	D	543	549	parallel
Strand 4	D	571	576	parallel
Strand 5	D	639	644	parallel
Strand 6	D	615	619	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5WKC

Analysis of interatomic Contacts of Structural Units in PDB entry:
5WKC