Analysis of interatomic Contacts of Structural Units in PDB entry:
5WKN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WKN entry

There are 4 chains in PDB entry 5WKN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 33MET 373
C
 SER 7GLU 25
B
 PRO 33GLN 372
D
 LEU 6VAL 24
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 5WKN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 61Right-handed alpha
Helix 2
AA2
A
65 79Right-handed alpha
Helix 3
AA3
A
81 89Right-handed alpha
Helix 4
AA4
A
123 135Right-handed alpha
Helix 5
AA5
A
141 145Right-handed 310
Helix 6
AA6
A
159 177Right-handed alpha
Helix 7
AA7
A
194 202Right-handed alpha
Helix 8
AA8
A
206 210Right-handed 310
Helix 9
AA9
A
212 226Right-handed alpha
Helix 10
AB1
A
226 241Right-handed alpha
Helix 11
AB2
A
248 262Right-handed alpha
Helix 12
AB3
A
266 276Right-handed alpha
Helix 13
AB4
A
281 288Right-handed 310
Helix 14
AB5
A
289 307Right-handed alpha
Helix 15
AB6
A
308 313Right-handed 310
Helix 16
AB7
A
320 328Right-handed 310
Helix 17
AB8
A
329 344Right-handed alpha
Helix 18
AB9
A
345 348Right-handed 310
Helix 19
AC1
A
358 371Right-handed alpha
Helix 20
AC2
C
16 24Right-handed alpha
Helix 21
AC3
B
44 61Right-handed alpha
Helix 22
AC4
B
65 79Right-handed alpha
Helix 23
AC5
B
81 88Right-handed alpha
Helix 24
AC6
B
123 134Right-handed alpha
Helix 25
AC7
B
141 145Right-handed 310
Helix 26
AC8
B
159 179Right-handed alpha
Helix 27
AC9
B
194 202Right-handed alpha
Helix 28
AD1
B
206 210Right-handed 310
Helix 29
AD2
B
212 226Right-handed alpha
Helix 30
AD3
B
226 242Right-handed alpha
Helix 31
AD4
B
248 262Right-handed alpha
Helix 32
AD5
B
266 276Right-handed alpha
Helix 33
AD6
B
281 288Right-handed 310
Helix 34
AD7
B
289 307Right-handed alpha
Helix 35
AD8
B
308 313Right-handed 310
Helix 36
AD9
B
318 328Right-handed 310
Helix 37
AE1
B
329 344Right-handed alpha
Helix 38
AE2
B
360 371Right-handed alpha
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There are 3 sheets in PDB entry 5WKN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 36first strand
Strand 2
A
102 103parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 36first strand
Strand 2
B
96 97parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 40first strand
Strand 2
B
101 105parallel
Strand 3
B
114 116anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il