Analysis of interatomic Contacts of Structural Units in PDB entry:
5WKP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WKP entry

There are 8 chains in PDB entry 5WKP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 55THR 455
B
 SER 5ASN 85
C
 GLU 4HIS 75
D
 VAL 15GLN 132
E
 SER 54GLN 456
F
 SER 4ASN 85
G
 ILE 3ASN 73
H
 LEU 10LYS 135
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 5WKP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
70 83Right-handed alpha
Helix 2
AA2
A
93 115Right-handed alpha
Helix 3
AA3
A
117 119Right-handed 310
Helix 4
AA4
A
126 142Right-handed alpha
Helix 5
AA5
A
156 169Right-handed alpha
Helix 6
AA6
A
185 193Right-handed alpha
Helix 7
AA7
A
214 225Right-handed alpha
Helix 8
AA8
A
257 259Right-handed 310
Helix 9
AA9
A
287 291Right-handed 310
Helix 10
AB1
A
297 335Right-handed alpha
Helix 11
AB2
A
362 370Right-handed alpha
Helix 12
AB3
A
389 395Right-handed alpha
Helix 13
AB4
A
398 403Right-handed alpha
Helix 14
AB5
A
415 437Right-handed alpha
Helix 15
AB6
A
437 445Right-handed alpha
Helix 16
AB7
B
6 21Right-handed alpha
Helix 17
AB8
B
25 43Right-handed alpha
Helix 18
AB9
B
48 76Right-handed alpha
Helix 19
AC1
B
81 85Right-handed 310
Helix 20
AC2
C
6 15Right-handed alpha
Helix 21
AC3
C
18 22Right-handed 310
Helix 22
AC4
C
35 51Right-handed alpha
Helix 23
AC5
C
55 60Right-handed alpha
Helix 24
AC6
C
64 74Right-handed alpha
Helix 25
AC7
D
70 84Right-handed alpha
Helix 26
AC8
D
88 94Right-handed alpha
Helix 27
AC9
D
96 105Right-handed alpha
Helix 28
AD1
D
111 132Right-handed alpha
Helix 29
AD2
E
70 83Right-handed alpha
Helix 30
AD3
E
93 115Right-handed alpha
Helix 31
AD4
E
117 119Right-handed 310
Helix 32
AD5
E
126 142Right-handed alpha
Helix 33
AD6
E
156 169Right-handed alpha
Helix 34
AD7
E
185 193Right-handed alpha
Helix 35
AD8
E
214 225Right-handed alpha
Helix 36
AD9
E
257 259Right-handed 310
Helix 37
AE1
E
297 335Right-handed alpha
Helix 38
AE2
E
362 370Right-handed alpha
Helix 39
AE3
E
389 395Right-handed alpha
Helix 40
AE4
E
398 403Right-handed alpha
Helix 41
AE5
E
415 437Right-handed alpha
Helix 42
AE6
E
437 445Right-handed alpha
Helix 43
AE7
F
5 21Right-handed alpha
Helix 44
AE8
F
25 43Right-handed alpha
Helix 45
AE9
F
48 76Right-handed alpha
Helix 46
AF1
F
81 85Right-handed 310
Helix 47
AF2
G
6 16Right-handed alpha
Helix 48
AF3
G
18 22Right-handed 310
Helix 49
AF4
G
35 50Right-handed alpha
Helix 50
AF5
G
55 60Right-handed alpha
Helix 51
AF6
G
64 73Right-handed alpha
Helix 52
AF7
H
11 18Right-handed alpha
Helix 53
AF8
H
70 84Right-handed alpha
Helix 54
AF9
H
88 93Right-handed alpha
Helix 55
AG1
H
96 105Right-handed alpha
Helix 56
AG2
H
107 110Right-handed 310
Helix 57
AG3
H
111 132Right-handed alpha
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There are 8 sheets in PDB entry 5WKP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 60first strand
Strand 2
A
373 374parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 124first strand
Strand 2
A
266 270anti-parallel
Strand 3
A
251 255anti-parallel
Strand 4
A
228 232parallel
Strand 5
A
197 201parallel
Strand 6
A
148 152parallel
Strand 7
A
172 176parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
340 343first strand
Strand 2
A
353 358anti-parallel
Strand 3
A
405 409anti-parallel
Strand 4
A
376 377anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
34 40first strand
Strand 2
D
47 54anti-parallel
Strand 3
D
60 68anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
59 60first strand
Strand 2
E
373 374parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
121 124first strand
Strand 2
E
266 270anti-parallel
Strand 3
E
251 255anti-parallel
Strand 4
E
228 232parallel
Strand 5
E
197 201parallel
Strand 6
E
148 152parallel
Strand 7
E
172 176parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
340 342first strand
Strand 2
E
353 358anti-parallel
Strand 3
E
405 409anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
34 40first strand
Strand 2
H
47 54anti-parallel
Strand 3
H
60 68anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il