Analysis of interatomic Contacts of Structural Units in PDB entry:
5WKU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5WKU entry

There are 3 chains in PDB entry 5WKU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 42	GLU 458
C	LEU 42	VAL 459
B	LEU 42	VAL 459

There are 45 helices in PDB entry 5WKU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	42	71	Right-handed alpha
Helix 2	AA2	A	105	113	Right-handed alpha
Helix 3	AA3	A	132	143	Right-handed alpha
Helix 4	AA4	A	154	163	Right-handed alpha
Helix 5	AA5	A	165	169	Right-handed alpha
Helix 6	AA6	A	181	185	Right-handed 310
Helix 7	AA7	A	226	230	Right-handed 310
Helix 8	AA8	A	258	263	Right-handed alpha
Helix 9	AA9	A	305	323	Right-handed alpha
Helix 10	AB1	A	337	344	Right-handed alpha
Helix 11	AB2	A	344	355	Right-handed alpha
Helix 12	AB3	A	382	393	Right-handed alpha
Helix 13	AB4	A	396	403	Right-handed alpha
Helix 14	AB5	A	426	442	Right-handed alpha
Helix 15	AB6	A	445	458	Right-handed alpha
Helix 16	AB7	C	43	71	Right-handed alpha
Helix 17	AB8	C	105	113	Right-handed alpha
Helix 18	AB9	C	132	143	Right-handed alpha
Helix 19	AC1	C	154	163	Right-handed alpha
Helix 20	AC2	C	165	169	Right-handed alpha
Helix 21	AC3	C	181	185	Right-handed 310
Helix 22	AC4	C	226	230	Right-handed 310
Helix 23	AC5	C	258	263	Right-handed alpha
Helix 24	AC6	C	305	323	Right-handed alpha
Helix 25	AC7	C	337	344	Right-handed alpha
Helix 26	AC8	C	344	356	Right-handed alpha
Helix 27	AC9	C	385	393	Right-handed alpha
Helix 28	AD1	C	396	403	Right-handed alpha
Helix 29	AD2	C	426	442	Right-handed alpha
Helix 30	AD3	C	445	459	Right-handed alpha
Helix 31	AD4	B	43	71	Right-handed alpha
Helix 32	AD5	B	105	113	Right-handed alpha
Helix 33	AD6	B	132	143	Right-handed alpha
Helix 34	AD7	B	154	163	Right-handed alpha
Helix 35	AD8	B	165	169	Right-handed alpha
Helix 36	AD9	B	181	183	Right-handed 310
Helix 37	AE1	B	226	230	Right-handed 310
Helix 38	AE2	B	258	263	Right-handed alpha
Helix 39	AE3	B	305	323	Right-handed alpha
Helix 40	AE4	B	337	344	Right-handed alpha
Helix 41	AE5	B	344	356	Right-handed alpha
Helix 42	AE6	B	382	393	Right-handed alpha
Helix 43	AE7	B	396	403	Right-handed alpha
Helix 44	AE8	B	426	442	Right-handed alpha
Helix 45	AE9	B	445	459	Right-handed alpha

There are 13 sheets in PDB entry 5WKU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	82	first strand
Strand 2	A	404	423	anti-parallel
Strand 3	A	219	224	anti-parallel
Strand 4	A	170	175	anti-parallel
Strand 5	A	178	179	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	82	first strand
Strand 2	A	404	423	anti-parallel
Strand 3	A	270	282	parallel
Strand 4	A	367	379	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	87	first strand
Strand 2	A	209	210	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	190	first strand
Strand 2	A	193	198	anti-parallel
Strand 3	A	90	95	anti-parallel
Strand 4	A	246	251	anti-parallel
Strand 5	A	264	266	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	292	first strand
Strand 2	A	364	365	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	74	82	first strand
Strand 2	C	404	423	anti-parallel
Strand 3	C	219	224	anti-parallel
Strand 4	C	170	175	anti-parallel
Strand 5	C	178	179	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	74	82	first strand
Strand 2	C	404	423	anti-parallel
Strand 3	C	270	282	parallel
Strand 4	C	367	379	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	86	87	first strand
Strand 2	C	209	210	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	186	190	first strand
Strand 2	C	193	198	anti-parallel
Strand 3	C	90	95	anti-parallel
Strand 4	C	246	251	anti-parallel
Strand 5	C	264	266	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	82	first strand
Strand 2	B	404	423	anti-parallel
Strand 3	B	219	224	anti-parallel
Strand 4	B	170	175	anti-parallel
Strand 5	B	178	179	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	82	first strand
Strand 2	B	404	423	anti-parallel
Strand 3	B	270	282	parallel
Strand 4	B	367	379	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	87	first strand
Strand 2	B	209	210	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	190	first strand
Strand 2	B	193	198	anti-parallel
Strand 3	B	90	95	anti-parallel
Strand 4	B	246	251	anti-parallel
Strand 5	B	264	266	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5WKU

Analysis of interatomic Contacts of Structural Units in PDB entry:
5WKU