Analysis of interatomic Contacts of Structural Units in PDB entry:
5WLS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WLS entry

There are 2 chains in PDB entry 5WLS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 26ASP 233
B
 SER 26ASP 233
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 11 helices in PDB entry 5WLS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 35Right-handed alpha
Helix 2
AA2
A
83 89Right-handed alpha
Helix 3
AA3
A
109 113Right-handed 310
Helix 4
AA4
A
156 162Right-handed 310
Helix 5
AA5
A
204 209Right-handed alpha
Helix 6
AA6
B
27 35Right-handed alpha
Helix 7
AA7
B
64 66Right-handed 310
Helix 8
AA8
B
83 89Right-handed alpha
Helix 9
AA9
B
109 113Right-handed 310
Helix 10
AB1
B
156 162Right-handed 310
Helix 11
AB2
B
204 209Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 5WLS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 63first strand
Strand 2
A
67 72anti-parallel
Strand 3
A
95 97parallel
Strand 4
A
118 120parallel
Strand 5
A
143 145parallel
Strand 6
A
167 169parallel
Strand 7
A
191 193parallel
Strand 8
A
214 216parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 105first strand
Strand 2
A
125 129parallel
Strand 3
A
150 152parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 177first strand
Strand 2
A
198 199parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 63first strand
Strand 2
B
67 72anti-parallel
Strand 3
B
95 97parallel
Strand 4
B
118 120parallel
Strand 5
B
143 145parallel
Strand 6
B
167 169parallel
Strand 7
B
191 193parallel
Strand 8
B
214 216parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 129first strand
Strand 2
B
150 152parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 177first strand
Strand 2
B
198 199parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
202 203first strand
Strand 2
B
224 225parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il