Analysis of interatomic Contacts of Structural Units in PDB entry:
5WM1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WM1 entry

There are 3 chains in PDB entry 5WM1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
P
 G 1 A 11
T
 C 1 C 17
A
 ARG 306VAL 738
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5WM1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
314 323Right-handed alpha
Helix 2
AA2
A
323 343Right-handed alpha
Helix 3
AA3
A
365 374Right-handed alpha
Helix 4
AA4
A
376 380Right-handed 310
Helix 5
AA5
A
404 410Right-handed alpha
Helix 6
AA6
A
417 425Right-handed alpha
Helix 7
AA7
A
437 455Right-handed alpha
Helix 8
AA8
A
481 501Right-handed alpha
Helix 9
AA9
A
513 525Right-handed alpha
Helix 10
AB1
A
533 537Right-handed 310
Helix 11
AB2
A
538 543Right-handed alpha
Helix 12
AB3
A
544 545Right-handed 310
Helix 13
AB4
A
546 550Right-handed 310
Helix 14
AB5
A
554 565Right-handed alpha
Helix 15
AB6
A
570 578Right-handed alpha
Helix 16
AB7
A
579 588Right-handed alpha
Helix 17
AB8
A
588 599Right-handed alpha
Helix 18
AB9
A
604 613Right-handed alpha
Helix 19
AC1
A
613 618Right-handed alpha
Helix 20
AC2
A
635 657Right-handed alpha
Helix 21
AC3
A
703 719Right-handed alpha
Helix 22
AC4
A
721 723Right-handed 310
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There are 3 sheets in PDB entry 5WM1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
460 465first strand
Strand 2
A
468 475anti-parallel
Strand 3
A
355 363anti-parallel
Strand 4
A
506 511anti-parallel
Strand 5
A
529 531parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 403first strand
Strand 2
A
389 391anti-parallel
Strand 3
A
432 434parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
623 627first strand
Strand 2
A
725 737anti-parallel
Strand 3
A
659 671anti-parallel
Strand 4
A
688 701anti-parallel
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