Analysis of interatomic Contacts of Structural Units in PDB entry:
5WM5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WM5 entry

There is 1 chain in PDB entry 5WM5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 19ALA 553
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5WM5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 39Right-handed alpha
Helix 2
AA2
A
48 58Right-handed alpha
Helix 3
AA3
A
74 91Right-handed alpha
Helix 4
AA4
A
106 120Right-handed alpha
Helix 5
AA5
A
131 143Right-handed alpha
Helix 6
AA6
A
158 169Right-handed alpha
Helix 7
AA7
A
188 190Right-handed 310
Helix 8
AA8
A
225 239Right-handed alpha
Helix 9
AA9
A
255 261Right-handed alpha
Helix 10
AB1
A
262 271Right-handed alpha
Helix 11
AB2
A
281 293Right-handed alpha
Helix 12
AB3
A
300 311Right-handed alpha
Helix 13
AB4
A
332 338Right-handed alpha
Helix 14
AB5
A
338 344Right-handed alpha
Helix 15
AB6
A
366 373Right-handed alpha
Helix 16
AB7
A
416 424Right-handed alpha
Helix 17
AB8
A
463 472Right-handed alpha
Helix 18
AB9
A
507 519Right-handed alpha
Helix 19
AC1
A
521 525Right-handed 310
Helix 20
AC2
A
544 551Right-handed alpha
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There are 7 sheets in PDB entry 5WM5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 73first strand
Strand 2
A
62 65anti-parallel
Strand 3
A
273 276parallel
Strand 4
A
246 249parallel
Strand 5
A
296 299parallel
Strand 6
A
323 327parallel
Strand 7
A
346 353parallel
Strand 8
A
356 360anti-parallel
Strand 9
A
376 377anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 126first strand
Strand 2
A
98 102parallel
Strand 3
A
146 150parallel
Strand 4
A
174 178parallel
Strand 5
A
185 186parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 153first strand
Strand 2
A
156 157anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 211first strand
Strand 2
A
219 224anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
383 387first strand
Strand 2
A
400 405anti-parallel
Strand 3
A
430 438anti-parallel
Strand 4
A
444 449anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
453 456first strand
Strand 2
A
459 462anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
476 486first strand
Strand 2
A
490 499anti-parallel
Strand 3
A
528 531parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il