Analysis of interatomic Contacts of Structural Units in PDB entry:
5WMF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5WMF entry

There are 5 chains in PDB entry 5WMF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 475	PRO 611
B	ASN 475	PRO 611
C	PRO 476	MET 613
D	ASN 475	PRO 611
E	LYS 477	PHE 571

There are 24 helices in PDB entry 5WMF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	477	490	Right-handed alpha
Helix 2	AA2	A	513	528	Right-handed alpha
Helix 3	AA3	A	568	584	Right-handed alpha
Helix 4	AA4	A	589	591	Right-handed 310
Helix 5	AA5	B	476	490	Right-handed alpha
Helix 6	AA6	B	513	528	Right-handed alpha
Helix 7	AA7	B	568	585	Right-handed alpha
Helix 8	AA8	B	589	591	Right-handed 310
Helix 9	AA9	C	477	490	Right-handed alpha
Helix 10	AB1	C	513	528	Right-handed alpha
Helix 11	AB2	C	568	585	Right-handed alpha
Helix 12	AB3	C	589	591	Right-handed 310
Helix 13	AB4	D	476	490	Right-handed alpha
Helix 14	AB5	D	513	528	Right-handed alpha
Helix 15	AB6	D	568	584	Right-handed alpha
Helix 16	AB7	D	589	591	Right-handed 310
Helix 17	AB8	E	478	490	Right-handed alpha
Helix 18	AB9	E	513	528	Right-handed alpha
Helix 19	AC1	E	568	584	Right-handed alpha
Helix 20	AC2	E	589	591	Right-handed 310
Helix 21	AC3	F	475	490	Right-handed alpha
Helix 22	AC4	F	513	528	Right-handed alpha
Helix 23	AC5	F	568	585	Right-handed alpha
Helix 24	AC6	F	589	591	Right-handed 310

There are 6 sheets in PDB entry 5WMF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	532	533	first strand
Strand 2	A	556	566	anti-parallel
Strand 3	A	503	511	anti-parallel
Strand 4	A	593	604	anti-parallel
Strand 5	B	593	600	anti-parallel
Strand 6	B	505	511	anti-parallel
Strand 7	B	556	566	anti-parallel
Strand 8	B	532	533	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	537	540	first strand
Strand 2	A	556	566	anti-parallel
Strand 3	A	503	511	anti-parallel
Strand 4	A	593	604	anti-parallel
Strand 5	B	593	600	anti-parallel
Strand 6	B	505	511	anti-parallel
Strand 7	B	556	566	anti-parallel
Strand 8	B	537	540	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	532	533	first strand
Strand 2	C	556	566	anti-parallel
Strand 3	C	503	511	anti-parallel
Strand 4	C	593	604	anti-parallel
Strand 5	D	593	604	anti-parallel
Strand 6	D	503	511	anti-parallel
Strand 7	D	556	566	anti-parallel
Strand 8	D	532	533	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	537	540	first strand
Strand 2	C	556	566	anti-parallel
Strand 3	C	503	511	anti-parallel
Strand 4	C	593	604	anti-parallel
Strand 5	D	593	604	anti-parallel
Strand 6	D	503	511	anti-parallel
Strand 7	D	556	566	anti-parallel
Strand 8	D	537	540	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	532	533	first strand
Strand 2	E	556	566	anti-parallel
Strand 3	E	503	511	anti-parallel
Strand 4	E	593	604	anti-parallel
Strand 5	F	593	604	anti-parallel
Strand 6	F	503	511	anti-parallel
Strand 7	F	556	566	anti-parallel
Strand 8	F	532	533	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	537	540	first strand
Strand 2	E	556	566	anti-parallel
Strand 3	E	503	511	anti-parallel
Strand 4	E	593	604	anti-parallel
Strand 5	F	593	604	anti-parallel
Strand 6	F	503	511	anti-parallel
Strand 7	F	556	566	anti-parallel
Strand 8	F	537	540	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5WMF

Analysis of interatomic Contacts of Structural Units in PDB entry:
5WMF