Analysis of interatomic Contacts of Structural Units in PDB entry:
5WMH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5WMH entry

There are 4 chains in PDB entry 5WMH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 71	LEU 469
B	SER 71	LEU 469
C	ASP 69	LEU 469
D	MET 70	PRO 191

There are109 helices in PDB entry 5WMH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	83	96	Right-handed alpha
Helix 2	AA2	A	114	127	Right-handed alpha
Helix 3	AA3	A	138	154	Right-handed alpha
Helix 4	AA4	A	158	160	Right-handed 310
Helix 5	AA5	A	167	180	Right-handed alpha
Helix 6	AA6	A	194	203	Right-handed alpha
Helix 7	AA7	A	213	217	Right-handed 310
Helix 8	AA8	A	221	229	Right-handed alpha
Helix 9	AA9	A	250	264	Right-handed alpha
Helix 10	AB1	A	287	291	Right-handed 310
Helix 11	AB2	A	294	296	Right-handed 310
Helix 12	AB3	A	321	336	Right-handed alpha
Helix 13	AB4	A	340	352	Right-handed alpha
Helix 14	AB5	A	357	381	Right-handed alpha
Helix 15	AB6	A	416	428	Right-handed alpha
Helix 16	AB7	A	436	439	Right-handed 310
Helix 17	AB8	A	451	467	Right-handed alpha
Helix 18	AB9	B	73	78	Right-handed alpha
Helix 19	AC1	B	93	97	Right-handed 310
Helix 20	AC2	B	114	128	Right-handed alpha
Helix 21	AC3	B	138	152	Right-handed alpha
Helix 22	AC4	B	158	160	Right-handed 310
Helix 23	AC5	B	167	180	Right-handed alpha
Helix 24	AC6	B	194	203	Right-handed alpha
Helix 25	AC7	B	213	217	Right-handed 310
Helix 26	AC8	B	221	228	Right-handed alpha
Helix 27	AC9	B	250	264	Right-handed alpha
Helix 28	AD1	B	287	291	Right-handed 310
Helix 29	AD2	B	294	296	Right-handed 310
Helix 30	AD3	B	310	314	Right-handed 310
Helix 31	AD4	B	321	333	Right-handed alpha
Helix 32	AD5	B	340	353	Right-handed alpha
Helix 33	AD6	B	357	381	Right-handed alpha
Helix 34	AD7	B	416	425	Right-handed alpha
Helix 35	AD8	B	436	439	Right-handed 310
Helix 36	AD9	B	451	467	Right-handed alpha
Helix 37	AE1	C	73	78	Right-handed alpha
Helix 38	AE2	C	84	97	Right-handed alpha
Helix 39	AE3	C	114	127	Right-handed alpha
Helix 40	AE4	C	138	154	Right-handed alpha
Helix 41	AE5	C	158	160	Right-handed 310
Helix 42	AE6	C	167	180	Right-handed alpha
Helix 43	AE7	C	193	203	Right-handed alpha
Helix 44	AE8	C	221	229	Right-handed alpha
Helix 45	AE9	C	250	263	Right-handed alpha
Helix 46	AF1	C	287	291	Right-handed 310
Helix 47	AF2	C	294	296	Right-handed 310
Helix 48	AF3	C	321	336	Right-handed alpha
Helix 49	AF4	C	340	353	Right-handed alpha
Helix 50	AF5	C	357	382	Right-handed alpha
Helix 51	AF6	C	403	407	Right-handed 310
Helix 52	AF7	C	416	429	Right-handed alpha
Helix 53	AF8	C	436	439	Right-handed 310
Helix 54	AF9	C	451	467	Right-handed alpha
Helix 55	AG1	D	84	89	Right-handed alpha
Helix 56	AG2	D	114	127	Right-handed alpha
Helix 57	AG3	D	138	154	Right-handed alpha
Helix 58	AG4	D	158	160	Right-handed 310
Helix 59	AG5	D	167	180	Right-handed alpha
Helix 60	AG6	D	194	203	Right-handed alpha
Helix 61	AG7	D	221	227	Right-handed alpha
Helix 62	AG8	D	250	264	Right-handed alpha
Helix 63	AG9	D	287	291	Right-handed 310
Helix 64	AH1	D	294	296	Right-handed 310
Helix 65	AH2	D	304	309	Right-handed alpha
Helix 66	AH3	D	310	314	Right-handed 310
Helix 67	AH4	D	321	333	Right-handed alpha
Helix 68	AH5	D	340	352	Right-handed alpha
Helix 69	AH6	D	357	381	Right-handed alpha
Helix 70	AH7	D	416	429	Right-handed alpha
Helix 71	AH8	D	436	439	Right-handed 310
Helix 72	AH9	D	451	466	Right-handed alpha
Helix 73	AI1	E	75	80	Right-handed alpha
Helix 74	AI2	E	84	92	Right-handed alpha
Helix 75	AI3	E	114	128	Right-handed alpha
Helix 76	AI4	E	138	154	Right-handed alpha
Helix 77	AI5	E	158	160	Right-handed 310
Helix 78	AI6	E	167	180	Right-handed alpha
Helix 79	AI7	E	194	201	Right-handed alpha
Helix 80	AI8	E	213	217	Right-handed 310
Helix 81	AI9	E	221	229	Right-handed alpha
Helix 82	AJ1	E	251	263	Right-handed alpha
Helix 83	AJ2	E	287	291	Right-handed 310
Helix 84	AJ3	E	310	314	Right-handed 310
Helix 85	AJ4	E	321	333	Right-handed alpha
Helix 86	AJ5	E	340	353	Right-handed alpha
Helix 87	AJ6	E	357	380	Right-handed alpha
Helix 88	AJ7	E	401	404	Right-handed 310
Helix 89	AJ8	E	416	429	Right-handed alpha
Helix 90	AJ9	E	436	439	Right-handed 310
Helix 91	AK1	E	451	467	Right-handed alpha
Helix 92	AK2	F	114	127	Right-handed alpha
Helix 93	AK3	F	140	145	Right-handed alpha
Helix 94	AK4	F	145	153	Right-handed alpha
Helix 95	AK5	F	158	160	Right-handed 310
Helix 96	AK6	F	167	180	Right-handed alpha
Helix 97	AK7	F	194	203	Right-handed alpha
Helix 98	AK8	F	213	217	Right-handed 310
Helix 99	AK9	F	250	263	Right-handed alpha
Helix 100	AL1	F	287	291	Right-handed 310
Helix 101	AL2	F	294	296	Right-handed 310
Helix 102	AL3	F	310	314	Right-handed 310
Helix 103	AL4	F	321	335	Right-handed alpha
Helix 104	AL5	F	340	354	Right-handed alpha
Helix 105	AL6	F	359	370	Right-handed alpha
Helix 106	AL7	F	375	380	Right-handed alpha
Helix 107	AL8	F	416	429	Right-handed alpha
Helix 108	AL9	F	436	439	Right-handed 310
Helix 109	AM1	F	451	467	Right-handed alpha

There are 13 sheets in PDB entry 5WMH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	165	first strand
Strand 2	A	316	319	anti-parallel
Strand 3	A	298	303	anti-parallel
Strand 4	A	268	272	parallel
Strand 5	A	233	239	parallel
Strand 6	A	185	189	parallel
Strand 7	A	206	210	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	395	398	first strand
Strand 2	A	444	447	anti-parallel
Strand 3	A	433	434	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	165	first strand
Strand 2	B	316	319	anti-parallel
Strand 3	B	298	303	anti-parallel
Strand 4	B	268	272	parallel
Strand 5	B	233	239	parallel
Strand 6	B	185	190	parallel
Strand 7	B	206	211	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	395	398	first strand
Strand 2	B	444	447	anti-parallel
Strand 3	B	433	434	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	165	first strand
Strand 2	C	316	319	anti-parallel
Strand 3	C	298	303	anti-parallel
Strand 4	C	268	272	parallel
Strand 5	C	233	239	parallel
Strand 6	C	185	190	parallel
Strand 7	C	206	211	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	395	396	first strand
Strand 2	C	444	447	anti-parallel
Strand 3	C	433	434	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	162	165	first strand
Strand 2	D	316	319	anti-parallel
Strand 3	D	298	303	anti-parallel
Strand 4	D	268	272	parallel
Strand 5	D	233	239	parallel
Strand 6	D	185	190	parallel
Strand 7	D	206	211	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	395	399	first strand
Strand 2	D	443	447	anti-parallel
Strand 3	D	433	434	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	162	165	first strand
Strand 2	E	316	319	anti-parallel
Strand 3	E	298	303	anti-parallel
Strand 4	E	268	272	parallel
Strand 5	E	233	239	parallel
Strand 6	E	185	189	parallel
Strand 7	E	206	210	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	395	399	first strand
Strand 2	E	443	447	anti-parallel
Strand 3	E	433	434	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	162	165	first strand
Strand 2	F	316	319	anti-parallel
Strand 3	F	302	303	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	206	210	first strand
Strand 2	F	185	189	parallel
Strand 3	F	235	239	parallel
Strand 4	F	268	272	parallel
Strand 5	F	298	299	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	396	398	first strand
Strand 2	F	444	446	anti-parallel
Strand 3	F	433	434	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5WMH

Analysis of interatomic Contacts of Structural Units in PDB entry:
5WMH