Analysis of interatomic Contacts of Structural Units in PDB entry:
5WMK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WMK entry

There is 1 chain in PDB entry 5WMK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 71VAL 473
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5WMK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
73 79Right-handed alpha
Helix 2
AA2
A
82 97Right-handed alpha
Helix 3
AA3
A
114 127Right-handed alpha
Helix 4
AA4
A
138 154Right-handed alpha
Helix 5
AA5
A
158 160Right-handed 310
Helix 6
AA6
A
167 180Right-handed alpha
Helix 7
AA7
A
195 203Right-handed alpha
Helix 8
AA8
A
213 217Right-handed 310
Helix 9
AA9
A
221 229Right-handed alpha
Helix 10
AB1
A
250 263Right-handed alpha
Helix 11
AB2
A
287 291Right-handed 310
Helix 12
AB3
A
294 296Right-handed 310
Helix 13
AB4
A
310 314Right-handed 310
Helix 14
AB5
A
321 336Right-handed alpha
Helix 15
AB6
A
340 352Right-handed alpha
Helix 16
AB7
A
353 356Right-handed 310
Helix 17
AB8
A
357 381Right-handed alpha
Helix 18
AB9
A
401 404Right-handed 310
Helix 19
AC1
A
416 429Right-handed alpha
Helix 20
AC2
A
436 439Right-handed 310
Helix 21
AC3
A
451 467Right-handed alpha
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There are 4 sheets in PDB entry 5WMK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 103first strand
Strand 2
A
430 431parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 165first strand
Strand 2
A
316 319anti-parallel
Strand 3
A
298 303anti-parallel
Strand 4
A
268 272parallel
Strand 5
A
233 239parallel
Strand 6
A
185 190parallel
Strand 7
A
206 211parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
395 399first strand
Strand 2
A
443 447anti-parallel
Strand 3
A
433 434anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
406 408first strand
Strand 2
A
412 414anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il