Analysis of interatomic Contacts of Structural Units in PDB entry:
5WMM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WMM entry

There are 2 chains in PDB entry 5WMM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 32VAL 904
B
 SER 2ARG 65
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 5WMM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 46Right-handed alpha
Helix 2
AA2
A
63 80Right-handed alpha
Helix 3
AA3
A
95 108Right-handed alpha
Helix 4
AA4
A
120 132Right-handed alpha
Helix 5
AA5
A
140 142Right-handed 310
Helix 6
AA6
A
184 192Right-handed alpha
Helix 7
AA7
A
193 197Right-handed 310
Helix 8
AA8
A
198 201Right-handed 310
Helix 9
AA9
A
213 224Right-handed alpha
Helix 10
AB1
A
238 249Right-handed alpha
Helix 11
AB2
A
258 268Right-handed alpha
Helix 12
AB3
A
269 273Right-handed 310
Helix 13
AB4
A
286 292Right-handed alpha
Helix 14
AB5
A
308 312Right-handed 310
Helix 15
AB6
A
322 326Right-handed 310
Helix 16
AB7
A
373 380Right-handed alpha
Helix 17
AB8
A
426 436Right-handed alpha
Helix 18
AB9
A
471 489Right-handed alpha
Helix 19
AC1
A
515 533Right-handed alpha
Helix 20
AC2
A
548 553Right-handed alpha
Helix 21
AC3
A
554 556Right-handed 310
Helix 22
AC4
A
565 579Right-handed alpha
Helix 23
AC5
A
612 616Right-handed 310
Helix 24
AC6
A
618 632Right-handed alpha
Helix 25
AC7
A
649 662Right-handed alpha
Helix 26
AC8
A
666 680Right-handed alpha
Helix 27
AC9
A
688 698Right-handed alpha
Helix 28
AD1
A
715 720Right-handed alpha
Helix 29
AD2
A
750 762Right-handed alpha
Helix 30
AD3
A
772 783Right-handed alpha
Helix 31
AD4
A
794 805Right-handed alpha
Helix 32
AD5
A
851 853Right-handed 310
Helix 33
AD6
A
854 873Right-handed alpha
Helix 34
AD7
A
874 878Right-handed 310
Helix 35
AD8
B
4 8Right-handed 310
Helix 36
AD9
B
44 56Right-handed alpha
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There are 12 sheets in PDB entry 5WMM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 62first strand
Strand 2
A
50 53anti-parallel
Strand 3
A
228 231parallel
Strand 4
A
203 206parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 114first strand
Strand 2
A
87 91parallel
Strand 3
A
135 138parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 170first strand
Strand 2
A
178 183anti-parallel
Strand 3
A
369 370anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 257first strand
Strand 2
A
277 281parallel
Strand 3
A
301 306parallel
Strand 4
A
316 320anti-parallel
Strand 5
A
334 335anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 344first strand
Strand 2
A
357 363anti-parallel
Strand 3
A
392 402anti-parallel
Strand 4
A
381 383anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 344first strand
Strand 2
A
357 363anti-parallel
Strand 3
A
392 402anti-parallel
Strand 4
A
408 413anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
418 420first strand
Strand 2
A
423 425anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
442 449first strand
Strand 2
A
455 462anti-parallel
Strand 3
A
881 884parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
586 589first strand
Strand 2
A
558 562parallel
Strand 3
A
537 541parallel
Strand 4
A
604 610parallel
Strand 5
A
633 645parallel
Strand 6
A
721 727anti-parallel
Strand 7
A
703 708anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
734 735first strand
Strand 2
A
834 835parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
741 743first strand
Strand 2
A
765 771parallel
Strand 3
A
820 827anti-parallel
Strand 4
A
807 813anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 27first strand
Strand 2
B
13 17anti-parallel
Strand 3
B
37 43anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il