Analysis of interatomic Contacts of Structural Units in PDB entry:
5WNA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WNA entry

There are 6 chains in PDB entry 5WNA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
GLU 1CYS 227
L
GLN 1GLY 211
B
ASN 161PRO 190
C
GLU 1LYS 225
D
GLN 1GLY 211
A
ASN 161PRO 190
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 5WNA. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
H
28 32Right-handed 310
Helix 2
AA2
H
62 65Right-handed 310
Helix 3
AA3
H
74 76Right-handed 310
Helix 4
AA4
H
87 91Right-handed 310
Helix 5
AA5
H
138 140Right-handed 310
Helix 6
AA6
H
198 202Right-handed 310
Helix 7
AA7
H
212 215Right-handed 310
Helix 8
AA8
L
79 83Right-handed 310
Helix 9
AA9
L
120 126Right-handed alpha
Helix 10
AB1
L
182 187Right-handed alpha
Helix 11
AB2
B
164 169Right-handed alpha
Helix 12
AB3
B
172 176Right-handed 310
Helix 13
AB4
B
179 184Right-handed alpha
Helix 14
AB5
C
28 32Right-handed 310
Helix 15
AB6
C
62 65Right-handed 310
Helix 16
AB7
C
74 76Right-handed 310
Helix 17
AB8
C
87 91Right-handed 310
Helix 18
AB9
C
138 140Right-handed 310
Helix 19
AC1
C
167 169Right-handed 310
Helix 20
AC2
C
198 202Right-handed 310
Helix 21
AC3
C
212 215Right-handed 310
Helix 22
AC4
D
79 83Right-handed 310
Helix 23
AC5
D
120 126Right-handed alpha
Helix 24
AC6
D
182 186Right-handed alpha
Helix 25
AC7
A
164 169Right-handed alpha
Helix 26
AC8
A
172 176Right-handed 310
Helix 27
AC9
A
179 186Right-handed alpha
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There are 22 sheets in PDB entry 5WNA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
78 83anti-parallel
Strand 4
H
68 73anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
11 12first strand
Strand 2
H
118 122parallel
Strand 3
H
92 102anti-parallel
Strand 4
H
34 39anti-parallel
Strand 5
H
45 51anti-parallel
Strand 6
H
58 60anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
11 12first strand
Strand 2
H
118 122parallel
Strand 3
H
92 102anti-parallel
Strand 4
H
109 114anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
131 135first strand
Strand 2
H
146 156anti-parallel
Strand 3
H
187 196anti-parallel
Strand 4
H
174 176anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
142 143first strand
Strand 2
H
146 156anti-parallel
Strand 3
H
187 196anti-parallel
Strand 4
H
180 181anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
162 165first strand
Strand 2
H
205 211anti-parallel
Strand 3
H
216 222anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
4 7first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
70 75anti-parallel
Strand 4
L
62 67anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
10 13first strand
Strand 2
L
101 105parallel
Strand 3
L
85 90anti-parallel
Strand 4
L
33 38anti-parallel
Strand 5
L
45 49anti-parallel
Strand 6
L
53 54anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
10 13first strand
Strand 2
L
101 105parallel
Strand 3
L
85 90anti-parallel
Strand 4
L
96 97anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
113 117first strand
Strand 2
L
128 138anti-parallel
Strand 3
L
172 181anti-parallel
Strand 4
L
158 162anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
152 154first strand
Strand 2
L
144 149anti-parallel
Strand 3
L
190 196anti-parallel
Strand 4
L
204 209anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
3 7first strand
Strand 2
C
18 25anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
68 73anti-parallel
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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
11 12first strand
Strand 2
C
118 122parallel
Strand 3
C
92 102anti-parallel
Strand 4
C
34 39anti-parallel
Strand 5
C
45 51anti-parallel
Strand 6
C
58 60anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
11 12first strand
Strand 2
C
118 122parallel
Strand 3
C
92 102anti-parallel
Strand 4
C
109 114anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
131 135first strand
Strand 2
C
146 156anti-parallel
Strand 3
C
187 196anti-parallel
Strand 4
C
174 176anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
142 143first strand
Strand 2
C
146 156anti-parallel
Strand 3
C
187 196anti-parallel
Strand 4
C
180 181anti-parallel
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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
162 165first strand
Strand 2
C
206 211anti-parallel
Strand 3
C
216 221anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
4 7first strand
Strand 2
D
19 25anti-parallel
Strand 3
D
70 75anti-parallel
Strand 4
D
62 67anti-parallel
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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
10 13first strand
Strand 2
D
101 105parallel
Strand 3
D
85 90anti-parallel
Strand 4
D
33 38anti-parallel
Strand 5
D
45 49anti-parallel
Strand 6
D
53 54anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
10 13first strand
Strand 2
D
101 105parallel
Strand 3
D
85 90anti-parallel
Strand 4
D
96 97anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
113 117first strand
Strand 2
D
128 138anti-parallel
Strand 3
D
172 181anti-parallel
Strand 4
D
158 162anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
152 154first strand
Strand 2
D
144 149anti-parallel
Strand 3
D
190 196anti-parallel
Strand 4
D
204 209anti-parallel
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