Analysis of interatomic Contacts of Structural Units in PDB entry:
5WNH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5WNH entry

There are 4 chains in PDB entry 5WNH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 6	SER 401
B	MET 5	ASN 402
C	HIS 4	ASN 402
D	SER 6	ALA 86

There are 69 helices in PDB entry 5WNH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	20	Right-handed alpha
Helix 2	AA2	A	26	42	Right-handed alpha
Helix 3	AA3	A	43	48	Right-handed alpha
Helix 4	AA4	A	49	70	Right-handed alpha
Helix 5	AA5	A	72	74	Right-handed 310
Helix 6	AA6	A	109	115	Right-handed alpha
Helix 7	AA7	A	120	131	Right-handed alpha
Helix 8	AA8	A	161	168	Right-handed alpha
Helix 9	AA9	A	171	192	Right-handed alpha
Helix 10	AB1	A	242	247	Right-handed alpha
Helix 11	AB2	A	258	274	Right-handed alpha
Helix 12	AB3	A	282	292	Right-handed alpha
Helix 13	AB4	A	292	297	Right-handed alpha
Helix 14	AB5	A	306	317	Right-handed alpha
Helix 15	AB6	A	319	323	Right-handed 310
Helix 16	AB7	A	329	334	Right-handed alpha
Helix 17	AB8	A	335	339	Right-handed 310
Helix 18	AB9	A	344	348	Right-handed 310
Helix 19	AC1	A	391	395	Right-handed 310
Helix 20	AC2	B	6	20	Right-handed alpha
Helix 21	AC3	B	26	42	Right-handed alpha
Helix 22	AC4	B	45	48	Right-handed 310
Helix 23	AC5	B	49	70	Right-handed alpha
Helix 24	AC6	B	72	74	Right-handed 310
Helix 25	AC7	B	109	116	Right-handed alpha
Helix 26	AC8	B	120	131	Right-handed alpha
Helix 27	AC9	B	161	168	Right-handed alpha
Helix 28	AD1	B	171	192	Right-handed alpha
Helix 29	AD2	B	242	247	Right-handed alpha
Helix 30	AD3	B	257	274	Right-handed alpha
Helix 31	AD4	B	282	292	Right-handed alpha
Helix 32	AD5	B	306	317	Right-handed alpha
Helix 33	AD6	B	329	334	Right-handed alpha
Helix 34	AD7	B	335	339	Right-handed 310
Helix 35	AD8	B	391	395	Right-handed 310
Helix 36	AD9	C	7	20	Right-handed alpha
Helix 37	AE1	C	26	42	Right-handed alpha
Helix 38	AE2	C	43	48	Right-handed alpha
Helix 39	AE3	C	49	70	Right-handed alpha
Helix 40	AE4	C	72	74	Right-handed 310
Helix 41	AE5	C	109	116	Right-handed alpha
Helix 42	AE6	C	120	131	Right-handed alpha
Helix 43	AE7	C	161	168	Right-handed alpha
Helix 44	AE8	C	171	192	Right-handed alpha
Helix 45	AE9	C	258	274	Right-handed alpha
Helix 46	AF1	C	282	292	Right-handed alpha
Helix 47	AF2	C	292	297	Right-handed alpha
Helix 48	AF3	C	306	317	Right-handed alpha
Helix 49	AF4	C	329	334	Right-handed alpha
Helix 50	AF5	C	335	339	Right-handed 310
Helix 51	AF6	C	391	395	Right-handed 310
Helix 52	AF7	D	7	20	Right-handed alpha
Helix 53	AF8	D	26	42	Right-handed alpha
Helix 54	AF9	D	43	48	Right-handed alpha
Helix 55	AG1	D	49	70	Right-handed alpha
Helix 56	AG2	D	72	74	Right-handed 310
Helix 57	AG3	D	109	115	Right-handed alpha
Helix 58	AG4	D	120	131	Right-handed alpha
Helix 59	AG5	D	161	168	Right-handed alpha
Helix 60	AG6	D	171	192	Right-handed alpha
Helix 61	AG7	D	242	248	Right-handed alpha
Helix 62	AG8	D	258	274	Right-handed alpha
Helix 63	AG9	D	282	292	Right-handed alpha
Helix 64	AH1	D	292	297	Right-handed alpha
Helix 65	AH2	D	306	317	Right-handed alpha
Helix 66	AH3	D	319	323	Right-handed 310
Helix 67	AH4	D	329	334	Right-handed alpha
Helix 68	AH5	D	335	339	Right-handed 310
Helix 69	AH6	D	391	395	Right-handed 310

There are 14 sheets in PDB entry 5WNH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	84	first strand
Strand 2	A	88	95	anti-parallel
Strand 3	A	101	108	anti-parallel
Strand 4	A	148	153	anti-parallel
Strand 5	A	139	144	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	160	first strand
Strand 2	A	204	206	anti-parallel
Strand 3	A	212	214	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	195	first strand
Strand 2	A	221	222	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	229	230	first strand
Strand 2	A	254	255	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	84	first strand
Strand 2	B	88	95	anti-parallel
Strand 3	B	101	108	anti-parallel
Strand 4	B	148	153	anti-parallel
Strand 5	B	139	144	anti-parallel
Strand 6	B	399	400	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	160	first strand
Strand 2	B	204	206	anti-parallel
Strand 3	B	212	214	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	195	first strand
Strand 2	B	221	222	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	84	first strand
Strand 2	C	88	95	anti-parallel
Strand 3	C	101	108	anti-parallel
Strand 4	C	148	153	anti-parallel
Strand 5	C	139	144	anti-parallel
Strand 6	C	399	400	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	160	first strand
Strand 2	C	204	206	anti-parallel
Strand 3	C	212	214	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	194	195	first strand
Strand 2	C	221	222	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	228	231	first strand
Strand 2	C	253	256	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	84	first strand
Strand 2	D	88	95	anti-parallel
Strand 3	D	101	108	anti-parallel
Strand 4	D	148	153	anti-parallel
Strand 5	D	139	144	anti-parallel
Strand 6	D	399	400	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	160	first strand
Strand 2	D	204	206	anti-parallel
Strand 3	D	212	214	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	194	195	first strand
Strand 2	D	221	222	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5WNH

Analysis of interatomic Contacts of Structural Units in PDB entry:
5WNH