Analysis of interatomic Contacts of Structural Units in PDB entry:
5WNJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WNJ entry

There is 1 chain in PDB entry 5WNJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 10LYS 289
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5WNJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 20Right-handed 310
Helix 2
AA2
A
59 76Right-handed alpha
Helix 3
AA3
A
104 111Right-handed alpha
Helix 4
AA4
A
114 135Right-handed alpha
Helix 5
AA5
A
145 147Right-handed 310
Helix 6
AA6
A
182 188Right-handed 310
Helix 7
AA7
A
189 195Right-handed alpha
Helix 8
AA8
A
201 219Right-handed alpha
Helix 9
AA9
A
228 238Right-handed alpha
Helix 10
AB1
A
251 266Right-handed alpha
Helix 11
AB2
A
269 273Right-handed 310
Helix 12
AB3
A
275 288Right-handed alpha
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There are 2 sheets in PDB entry 5WNJ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 17first strand
Strand 2
A
84 88parallel
Strand 3
A
93 97anti-parallel
Strand 4
A
46 52anti-parallel
Strand 5
A
36 41anti-parallel
Strand 6
A
22 27anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 103first strand
Strand 2
A
149 151anti-parallel
Strand 3
A
157 159anti-parallel
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