Analysis of interatomic Contacts of Structural Units in PDB entry:
5WOT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WOT entry

There is 1 chain in PDB entry 5WOT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1GLY 198
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 5WOT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 38Right-handed 310
Helix 2
AA2
A
168 172Right-handed 310
Helix 3
AA3
A
173 177Right-handed 310
Helix 4
AA4
A
184 189Right-handed alpha
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There are 3 sheets in PDB entry 5WOT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 5first strand
Strand 2
A
74 81parallel
Strand 3
A
84 87anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 18first strand
Strand 2
A
8 11anti-parallel
Strand 3
A
43 46anti-parallel
Strand 4
A
49 58anti-parallel
Strand 5
A
64 69anti-parallel
Strand 6
A
28 34anti-parallel
Strand 7
A
21 25anti-parallel
Strand 8
A
194 195anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 103first strand
Strand 2
A
109 123anti-parallel
Strand 3
A
126 134anti-parallel
Strand 4
A
179 183anti-parallel
Strand 5
A
154 161anti-parallel
Strand 6
A
146 148anti-parallel
Strand 7
A
99 103anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il