Analysis of interatomic Contacts of Structural Units in PDB entry:
5WP4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WP4 entry

There is 1 chain in PDB entry 5WP4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 7ASN 491
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5WP4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 21Right-handed alpha
Helix 2
AA2
A
24 30Right-handed alpha
Helix 3
AA3
A
33 49Right-handed alpha
Helix 4
AA4
A
67 75Right-handed alpha
Helix 5
AA5
A
84 96Right-handed alpha
Helix 6
AA6
A
128 132Right-handed 310
Helix 7
AA7
A
133 147Right-handed alpha
Helix 8
AA8
A
178 189Right-handed alpha
Helix 9
AA9
A
209 217Right-handed alpha
Helix 10
AB1
A
235 244Right-handed alpha
Helix 11
AB2
A
247 259Right-handed alpha
Helix 12
AB3
A
266 277Right-handed alpha
Helix 13
AB4
A
294 305Right-handed alpha
Helix 14
AB5
A
314 325Right-handed alpha
Helix 15
AB6
A
357 361Right-handed 310
Helix 16
AB7
A
363 374Right-handed alpha
Helix 17
AB8
A
394 405Right-handed alpha
Helix 18
AB9
A
410 421Right-handed alpha
Helix 19
AC1
A
431 449Right-handed alpha
Helix 20
AC2
A
449 457Right-handed alpha
Helix 21
AC3
A
458 478Right-handed alpha
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There are 2 sheets in PDB entry 5WP4. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 105first strand
Strand 2
A
77 82parallel
Strand 3
A
56 60parallel
Strand 4
A
120 125parallel
Strand 5
A
148 159parallel
Strand 6
A
221 230anti-parallel
Strand 7
A
198 208anti-parallel
Strand 8
A
191 192anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 336first strand
Strand 2
A
307 312parallel
Strand 3
A
285 289parallel
Strand 4
A
349 355parallel
Strand 5
A
375 388parallel
Strand 6
A
481 489anti-parallel
Strand 7
A
424 430anti-parallel
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