Analysis of interatomic Contacts of Structural Units in PDB entry:
5WP5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WP5 entry

There are 2 chains in PDB entry 5WP5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 7LYS 491
B
 GLU 7LYS 491
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 5WP5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 19Right-handed alpha
Helix 2
AA2
A
43 49Right-handed alpha
Helix 3
AA3
A
67 75Right-handed alpha
Helix 4
AA4
A
84 96Right-handed alpha
Helix 5
AA5
A
128 132Right-handed 310
Helix 6
AA6
A
133 147Right-handed alpha
Helix 7
AA7
A
161 166Right-handed 310
Helix 8
AA8
A
178 189Right-handed alpha
Helix 9
AA9
A
234 248Right-handed alpha
Helix 10
AB1
A
250 259Right-handed alpha
Helix 11
AB2
A
266 276Right-handed alpha
Helix 12
AB3
A
277 279Right-handed 310
Helix 13
AB4
A
294 305Right-handed alpha
Helix 14
AB5
A
314 326Right-handed alpha
Helix 15
AB6
A
357 361Right-handed 310
Helix 16
AB7
A
363 374Right-handed alpha
Helix 17
AB8
A
394 405Right-handed alpha
Helix 18
AB9
A
410 421Right-handed alpha
Helix 19
AC1
A
431 449Right-handed alpha
Helix 20
AC2
A
449 457Right-handed alpha
Helix 21
AC3
A
458 478Right-handed alpha
Helix 22
AC4
B
8 20Right-handed alpha
Helix 23
AC5
B
45 49Right-handed alpha
Helix 24
AC6
B
67 75Right-handed alpha
Helix 25
AC7
B
84 96Right-handed alpha
Helix 26
AC8
B
128 132Right-handed 310
Helix 27
AC9
B
133 147Right-handed alpha
Helix 28
AD1
B
161 166Right-handed 310
Helix 29
AD2
B
178 189Right-handed alpha
Helix 30
AD3
B
234 248Right-handed alpha
Helix 31
AD4
B
250 259Right-handed alpha
Helix 32
AD5
B
266 276Right-handed alpha
Helix 33
AD6
B
277 279Right-handed 310
Helix 34
AD7
B
294 305Right-handed alpha
Helix 35
AD8
B
314 326Right-handed alpha
Helix 36
AD9
B
357 361Right-handed 310
Helix 37
AE1
B
363 374Right-handed alpha
Helix 38
AE2
B
394 405Right-handed alpha
Helix 39
AE3
B
410 421Right-handed alpha
Helix 40
AE4
B
431 449Right-handed alpha
Helix 41
AE5
B
449 457Right-handed alpha
Helix 42
AE6
B
458 478Right-handed alpha
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There are 4 sheets in PDB entry 5WP5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 105first strand
Strand 2
A
77 82parallel
Strand 3
A
56 60parallel
Strand 4
A
120 125parallel
Strand 5
A
148 159parallel
Strand 6
A
221 230anti-parallel
Strand 7
A
198 208anti-parallel
Strand 8
A
190 192anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 336first strand
Strand 2
A
307 312parallel
Strand 3
A
285 289parallel
Strand 4
A
349 355parallel
Strand 5
A
375 388parallel
Strand 6
A
481 489anti-parallel
Strand 7
A
424 430anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 105first strand
Strand 2
B
78 82parallel
Strand 3
B
57 60parallel
Strand 4
B
120 125parallel
Strand 5
B
148 159parallel
Strand 6
B
221 230anti-parallel
Strand 7
B
198 208anti-parallel
Strand 8
B
190 192anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
332 336first strand
Strand 2
B
307 312parallel
Strand 3
B
285 289parallel
Strand 4
B
349 355parallel
Strand 5
B
375 388parallel
Strand 6
B
481 489anti-parallel
Strand 7
B
424 430anti-parallel
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