Analysis of interatomic Contacts of Structural Units in PDB entry:
5WPA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WPA entry

There are 2 chains in PDB entry 5WPA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 291TYR 527
B
 ASP 66MET 320
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5WPA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
294 296Right-handed 310
Helix 2
AA2
A
309 317Right-handed alpha
Helix 3
AA3
A
341 353Right-handed alpha
Helix 4
AA4
A
383 392Right-handed alpha
Helix 5
AA5
A
393 395Right-handed 310
Helix 6
AA6
A
420 434Right-handed alpha
Helix 7
AA7
A
485 527Right-handed alpha
Helix 8
AA8
B
79 81Right-handed 310
Helix 9
AA9
B
94 103Right-handed alpha
Helix 10
AB1
B
104 106Right-handed 310
Helix 11
AB2
B
126 138Right-handed alpha
Helix 12
AB3
B
168 177Right-handed alpha
Helix 13
AB4
B
205 219Right-handed alpha
Helix 14
AB5
B
245 249Right-handed 310
Helix 15
AB6
B
252 260Right-handed alpha
Helix 16
AB7
B
270 317Right-handed alpha
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There are 7 sheets in PDB entry 5WPA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 329first strand
Strand 2
A
334 338anti-parallel
Strand 3
A
298 302anti-parallel
Strand 4
A
363 366anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 357first strand
Strand 2
A
360 361anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
397 404first strand
Strand 2
A
410 418anti-parallel
Strand 3
A
372 376anti-parallel
Strand 4
A
446 449anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
436 437first strand
Strand 2
B
264 265anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
479 480first strand
Strand 2
B
221 222anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 114first strand
Strand 2
B
119 123anti-parallel
Strand 3
B
83 87anti-parallel
Strand 4
B
148 151anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 189first strand
Strand 2
B
195 203anti-parallel
Strand 3
B
157 161anti-parallel
Strand 4
B
231 234anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il