Analysis of interatomic Contacts of Structural Units in PDB entry:
5WPI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WPI entry

There are 2 chains in PDB entry 5WPI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 3ILE 366
B
 TYR 3ILE 366
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 5WPI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 51Right-handed alpha
Helix 2
AA2
A
52 54Right-handed 310
Helix 3
AA3
A
55 62Right-handed alpha
Helix 4
AA4
A
68 89Right-handed alpha
Helix 5
AA5
A
120 124Right-handed alpha
Helix 6
AA6
A
139 143Right-handed 310
Helix 7
AA7
A
144 148Right-handed 310
Helix 8
AA8
A
149 159Right-handed alpha
Helix 9
AA9
A
172 176Right-handed 310
Helix 10
AB1
A
200 202Right-handed 310
Helix 11
AB2
A
220 232Right-handed alpha
Helix 12
AB3
A
266 269Right-handed 310
Helix 13
AB4
A
273 277Right-handed 310
Helix 14
AB5
A
301 305Right-handed 310
Helix 15
AB6
A
320 330Right-handed alpha
Helix 16
AB7
A
339 345Right-handed alpha
Helix 17
AB8
B
44 51Right-handed alpha
Helix 18
AB9
B
52 54Right-handed 310
Helix 19
AC1
B
55 62Right-handed alpha
Helix 20
AC2
B
68 89Right-handed alpha
Helix 21
AC3
B
120 124Right-handed alpha
Helix 22
AC4
B
139 143Right-handed 310
Helix 23
AC5
B
146 148Right-handed 310
Helix 24
AC6
B
149 159Right-handed alpha
Helix 25
AC7
B
172 176Right-handed 310
Helix 26
AC8
B
200 202Right-handed 310
Helix 27
AC9
B
220 232Right-handed alpha
Helix 28
AD1
B
273 277Right-handed 310
Helix 29
AD2
B
301 305Right-handed 310
Helix 30
AD3
B
320 330Right-handed alpha
Helix 31
AD4
B
342 346Right-handed 310
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There are 12 sheets in PDB entry 5WPI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 94first strand
Strand 2
A
27 32parallel
Strand 3
A
353 358anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 107first strand
Strand 2
A
110 112anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 128first strand
Strand 2
A
131 134anti-parallel
Strand 3
A
162 165parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 207first strand
Strand 2
A
210 213anti-parallel
Strand 3
A
236 239parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 258first strand
Strand 2
A
261 264anti-parallel
Strand 3
A
280 282parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
307 310first strand
Strand 2
A
313 317anti-parallel
Strand 3
A
333 337parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 94first strand
Strand 2
B
27 32parallel
Strand 3
B
353 358anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 106first strand
Strand 2
B
111 112anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 128first strand
Strand 2
B
131 134anti-parallel
Strand 3
B
162 165parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 207first strand
Strand 2
B
210 213anti-parallel
Strand 3
B
236 239parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
254 258first strand
Strand 2
B
261 264anti-parallel
Strand 3
B
280 282parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
307 310first strand
Strand 2
B
313 317anti-parallel
Strand 3
B
333 337parallel
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